| Sequence ID | dm3.chr2L |
|---|---|
| Location | 15,554,802 – 15,554,892 |
| Length | 90 |
| Max. P | 0.826417 |
| Location | 15,554,802 – 15,554,892 |
|---|---|
| Length | 90 |
| Sequences | 3 |
| Columns | 90 |
| Reading direction | forward |
| Mean pairwise identity | 100.00 |
| Shannon entropy | -0.00000 |
| G+C content | 0.36667 |
| Mean single sequence MFE | -11.26 |
| Consensus MFE | -11.26 |
| Energy contribution | -11.26 |
| Covariance contribution | -0.00 |
| Combinations/Pair | 1.00 |
| Mean z-score | -1.33 |
| Structure conservation index | 1.00 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.82 |
| SVM RNA-class probability | 0.826417 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr2L 15554802 90 + 23011544 AUCAACGAAAACAACAAUGCUGGCUACAACUAUGUUCUAUGGCUAAUACAAAAGCUACAAACAACAAAUCGCCAACAACAACUAAGCCAA .................((.((((........((((...(((((........)))))..)))).......)))).))............. ( -11.26, z-score = -1.33, R) >droSim1.chr2L 15312858 90 + 22036055 AUCAACGAAAACAACAAUGCUGGCUACAACUAUGUUCUAUGGCUAAUACAAAAGCUACAAACAACAAAUCGCCAACAACAACUAAGCCAA .................((.((((........((((...(((((........)))))..)))).......)))).))............. ( -11.26, z-score = -1.33, R) >droSec1.super_3 1816654 90 + 7220098 AUCAACGAAAACAACAAUGCUGGCUACAACUAUGUUCUAUGGCUAAUACAAAAGCUACAAACAACAAAUCGCCAACAACAACUAAGCCAA .................((.((((........((((...(((((........)))))..)))).......)))).))............. ( -11.26, z-score = -1.33, R) >consensus AUCAACGAAAACAACAAUGCUGGCUACAACUAUGUUCUAUGGCUAAUACAAAAGCUACAAACAACAAAUCGCCAACAACAACUAAGCCAA .................((.((((........((((...(((((........)))))..)))).......)))).))............. (-11.26 = -11.26 + -0.00)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 21:43:09 2011