| Sequence ID | dm3.chr2L |
|---|---|
| Location | 15,546,120 – 15,546,180 |
| Length | 60 |
| Max. P | 0.565346 |
| Location | 15,546,120 – 15,546,180 |
|---|---|
| Length | 60 |
| Sequences | 4 |
| Columns | 60 |
| Reading direction | reverse |
| Mean pairwise identity | 95.56 |
| Shannon entropy | 0.07075 |
| G+C content | 0.48524 |
| Mean single sequence MFE | -16.53 |
| Consensus MFE | -15.14 |
| Energy contribution | -14.95 |
| Covariance contribution | -0.19 |
| Combinations/Pair | 1.08 |
| Mean z-score | -1.33 |
| Structure conservation index | 0.92 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.15 |
| SVM RNA-class probability | 0.565346 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr2L 15546120 60 - 23011544 ACACACAAUUUUGCCUGAGUGUCUUUUGGCAAGCGGCGUCUACUGCUUGGCACUGACUUU ....................(((...((.(((((((......))))))).))..)))... ( -15.40, z-score = -0.70, R) >droSim1.chr2L 15304088 60 - 22036055 ACACACACUUUUGCCUGAGUGUCUUUUGGCAAGCGGCGUCUACUGCUUGGCACUGACUUU ....((((((......))))))....((.(((((((......))))))).))........ ( -17.30, z-score = -1.49, R) >droSec1.super_3 1801018 60 - 7220098 ACACACACUUUUGCCUGAGUGUCUUUUGGCAAGCGGCGUCUACUGCUUGGCACUGACUUU ....((((((......))))))....((.(((((((......))))))).))........ ( -17.30, z-score = -1.49, R) >droEre2.scaffold_4929 7294549 59 - 26641161 AC-UACAAUUUUGCCUCAGUGUUUUUUGGCAAGCGGCGUCUACUGCUUGGCACUGACUUU ..-............(((((((.......(((((((......)))))))))))))).... ( -16.11, z-score = -1.66, R) >consensus ACACACAAUUUUGCCUGAGUGUCUUUUGGCAAGCGGCGUCUACUGCUUGGCACUGACUUU ....................(((...((.(((((((......))))))).))..)))... (-15.14 = -14.95 + -0.19)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 21:43:06 2011