| Sequence ID | dm3.chr2L |
|---|---|
| Location | 15,537,951 – 15,538,026 |
| Length | 75 |
| Max. P | 0.608778 |
| Location | 15,537,951 – 15,538,026 |
|---|---|
| Length | 75 |
| Sequences | 6 |
| Columns | 76 |
| Reading direction | forward |
| Mean pairwise identity | 80.97 |
| Shannon entropy | 0.36277 |
| G+C content | 0.61324 |
| Mean single sequence MFE | -33.42 |
| Consensus MFE | -18.10 |
| Energy contribution | -20.63 |
| Covariance contribution | 2.53 |
| Combinations/Pair | 1.17 |
| Mean z-score | -1.91 |
| Structure conservation index | 0.54 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.24 |
| SVM RNA-class probability | 0.608778 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr2L 15537951 75 + 23011544 GAUGGACUGGUGGUGCUAGUGUCUGUUGGCCUGCGGCAGUCGAGUGCUGGCAGCGCUUGUUCGC-CUGGCCAACAA (((..(((((.....))))))))((((((((...(((...(((((((.....)))))))...))-).)))))))). ( -34.50, z-score = -2.00, R) >droSim1.chr2L 15295542 75 + 22036055 GAUGGACUGGUGGUGCUAGUGUCUGUUGGCCUGCGGCUGUCGAGUGCUGGCAGCGCUUGUUGGC-CUGGCCAACAA (((..(((((.....))))))))((((((((...(((((.(((((((.....))))))).))))-).)))))))). ( -36.50, z-score = -2.97, R) >droSec1.super_3 1791006 75 + 7220098 GAUGGACUGGUGGUGCUAGUGUCUGUUGGCCUGCGGCUGUCGAGUGCUGGCAGCGCUUGUUGGC-CUGGCCAACAA (((..(((((.....))))))))((((((((...(((((.(((((((.....))))))).))))-).)))))))). ( -36.50, z-score = -2.97, R) >droYak2.chr2L 2536526 75 - 22324452 GAUGGACUGGUGGUGGUAGUGUCUGUUUGCCAGCGGCAGUCGAGUGCUAGCAGCGCUUGCUGGC-CUGACCAACAA ....(((((.((.((((((.......)))))).)).))))).((.((((((((...))))))))-))......... ( -29.30, z-score = -0.69, R) >droEre2.scaffold_4929 7285448 75 + 26641161 GAUGAACUGGUGGUGCUAGUGUCUGUUUGCCUGCGGCUGUCGAGUGCCGGCAGCGCUUGUUGGC-CUGGCCAACAA (((..(((((.....))))))))((((.(((...(((((.(((((((.....))))))).))))-).))).)))). ( -29.30, z-score = -0.93, R) >droVir3.scaffold_12963 12233716 72 + 20206255 GAUAGCCAGGUCCGGCUA---UUUGCCUGC-UGCGGAAACUGGGCACAGGCAGCUGAUGCCGGCGCUGGGCUUCGG ((.((((.((((((((..---.(((((((.-((((....)...)))))))))).....))))).))).)))))).. ( -34.40, z-score = -1.88, R) >consensus GAUGGACUGGUGGUGCUAGUGUCUGUUGGCCUGCGGCAGUCGAGUGCUGGCAGCGCUUGUUGGC_CUGGCCAACAA ........((((.((((((..(..(.((((.....)))).)..)..)))))).))))(((((((....))))))). (-18.10 = -20.63 + 2.53)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 21:43:06 2011