| Sequence ID | dm3.chr2L |
|---|---|
| Location | 15,537,755 – 15,537,821 |
| Length | 66 |
| Max. P | 0.992734 |
| Location | 15,537,755 – 15,537,821 |
|---|---|
| Length | 66 |
| Sequences | 6 |
| Columns | 66 |
| Reading direction | forward |
| Mean pairwise identity | 72.22 |
| Shannon entropy | 0.53483 |
| G+C content | 0.43707 |
| Mean single sequence MFE | -18.10 |
| Consensus MFE | -10.17 |
| Energy contribution | -11.98 |
| Covariance contribution | 1.81 |
| Combinations/Pair | 1.38 |
| Mean z-score | -2.19 |
| Structure conservation index | 0.56 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 2.56 |
| SVM RNA-class probability | 0.992734 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr2L 15537755 66 + 23011544 AAUUUGUGAGGACAAUGUGGCUUUUUUCUACAGUGUCCUUAUUUACUGGGCUUACCGCUCAAGUGG .....(((((((((.(((((.......))))).))))))))).((((((((.....)))).)))). ( -22.80, z-score = -3.75, R) >droAna3.scaffold_12984 196949 51 - 754457 AAUUCAUAAG--UAGUCCCACAUUUUCCUGCAGUGCCUUAGUUUAGCUGUUUA------------- ..........--.................(((((...........)))))...------------- ( -3.20, z-score = 0.59, R) >droEre2.scaffold_4929 7285226 65 + 26641161 AGUUUGUGAGGACACAGUGGUUUUUUC-GACAGUGUUCAUACCUACUGGGCACACCGCUCAAGUGG .....(((.((((((.((.(......)-.)).)))))).)))(((((((((.....)))).))))) ( -19.30, z-score = -1.17, R) >droYak2.chr2L 2536304 66 - 22324452 AACUUGUGAGGACAAAGUGGCCUUUUCCGACAGUGUCCUUAUCUACUUGGCUUACCGCUCAAGUGG .....(((((((((..((((......)).))..)))))))))(((((((((.....)).))))))) ( -22.90, z-score = -2.98, R) >droSec1.super_3 1790800 66 + 7220098 AAUUUGUGAGGACAAUGUGGCUUUUUUCGACAGUGUCCUUAUUUACUGGGCUUACCGCUCAAGUGG .....(((((((((.(((.(.......).))).))))))))).((((((((.....)))).)))). ( -20.70, z-score = -2.72, R) >droSim1.chr2L 15295346 66 + 22036055 AAUUUUUGAGGACAAUGUGACUUUUUUCGACAGUGUCCUUAUUUACUGGGCUUACCGCUCAAGUGG ......((((((((.(((((......)).))).))))))))..((((((((.....)))).)))). ( -19.70, z-score = -3.11, R) >consensus AAUUUGUGAGGACAAUGUGGCUUUUUCCGACAGUGUCCUUAUUUACUGGGCUUACCGCUCAAGUGG .....(((((((((.(((...........))).)))))))))(((((((((.....)))).))))) (-10.17 = -11.98 + 1.81)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 21:43:05 2011