| Sequence ID | dm3.chr2L |
|---|---|
| Location | 15,527,666 – 15,527,758 |
| Length | 92 |
| Max. P | 0.920643 |
| Location | 15,527,666 – 15,527,758 |
|---|---|
| Length | 92 |
| Sequences | 5 |
| Columns | 116 |
| Reading direction | forward |
| Mean pairwise identity | 58.88 |
| Shannon entropy | 0.65738 |
| G+C content | 0.52158 |
| Mean single sequence MFE | -28.68 |
| Consensus MFE | -11.08 |
| Energy contribution | -13.08 |
| Covariance contribution | 2.00 |
| Combinations/Pair | 1.57 |
| Mean z-score | -1.71 |
| Structure conservation index | 0.39 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 1.28 |
| SVM RNA-class probability | 0.920643 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr2L 15527666 92 + 23011544 ACCAGAAGCCGCGGCUAGAAAGUGGCUGGGAAAACGGCAUAAAA-AGCGGAUACAACGCCAGAGGCUGGCAUGUGUCCGCGAAAUAUACGAGG----------------------- .((...((((((.........)))))).))....((..(((...-.(((((((((..(((((...))))).)))))))))....))).))...----------------------- ( -35.70, z-score = -3.77, R) >droAna3.scaffold_12984 123049 113 - 754457 ACCAAAAGCCGCGAC--GAAAGUGUCUGGGACU-CGGCAUAAAAUAGUAGAGGAGCCGCCACAGGCUUCUAUAUGUACGUAAAACAAAGGCGGGGGAACAACGCUGCGAGGUGGAU .(((...((.(((((--....))...((...((-(.((............(((((((......)))))))...(((.......)))...)).)))...)).))).))....))).. ( -32.80, z-score = -0.75, R) >droSec1.super_3 1780665 92 + 7220098 ACCAGAAGCCGCGGCUAGAAAGUGGCUGGGAAAACGGCAUAAAA-AGCGGAUACAACGCCAAAGGCUGGCAUGUGUCCGCGAAAUAUAAGAGG----------------------- .((....((((((((((.....))))))......))))......-.(((((((((..((((.....)))).)))))))))...........))----------------------- ( -33.10, z-score = -3.27, R) >droEre2.scaffold_4929 7273622 92 + 26641161 ACCAGAAGUCGCGGCUAGAAAGUGGCUGGUAAAACGGCAUAAAA-AACGGAUACAACCCCAAAGGCUGGCAUGUGUCCGCGAAAUAUAGCAGG----------------------- .............((((.....((((((......))))......-..((((((((...(((.....)))..)))))))))).....))))...----------------------- ( -23.70, z-score = -0.34, R) >droWil1.scaffold_180764 1480192 73 + 3949147 CCUGGCAGCUGCGG-----AAGCUGUGGUGAAAGUGGUAGAGAA----AGAGAUCGCGUU----GUUGGUACAUGCCUAAAGGAGU------------------------------ (((((((...((..-----..))((((.(((..(((((......----....)))))...----.))).))))))))...)))...------------------------------ ( -18.10, z-score = -0.42, R) >consensus ACCAGAAGCCGCGGCUAGAAAGUGGCUGGGAAAACGGCAUAAAA_AGCGGAUACAACGCCAAAGGCUGGCAUGUGUCCGCGAAAUAUAGGAGG_______________________ .((...((((((.........)))))).))................(((((((((..((((.....)))).))))))))).................................... (-11.08 = -13.08 + 2.00)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 21:43:04 2011