| Sequence ID | dm3.chr2L |
|---|---|
| Location | 15,523,952 – 15,524,046 |
| Length | 94 |
| Max. P | 0.950792 |
| Location | 15,523,952 – 15,524,046 |
|---|---|
| Length | 94 |
| Sequences | 5 |
| Columns | 109 |
| Reading direction | forward |
| Mean pairwise identity | 84.43 |
| Shannon entropy | 0.24963 |
| G+C content | 0.34687 |
| Mean single sequence MFE | -11.07 |
| Consensus MFE | -9.65 |
| Energy contribution | -9.85 |
| Covariance contribution | 0.20 |
| Combinations/Pair | 1.00 |
| Mean z-score | -1.92 |
| Structure conservation index | 0.87 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 1.56 |
| SVM RNA-class probability | 0.950792 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr2L 15523952 94 + 23011544 ---------------CUAAAACCUCCCGCUUAUAUACAUAUAUCUUAUAUCUCCCCAUUUACUCGCAUUUUGUGUCUAAACUUCUUAUAUUAAUAGCAAAAGGUGAGUG ---------------............................................(((((((.((((((...(((..........)))...)))))).))))))) ( -11.20, z-score = -1.35, R) >droEre2.scaffold_4929 7269901 89 + 26641161 ---------------CUUAAGC-UCCUGCUUAUA----UCUCUGUUAUAUCUCCCCAUUUACUCGCAUUUUGUCUCUAAACUUCUUAUAUUAAUAGCAAAAGGUGAGUG ---------------..(((((-....)))))..----.....................(((((((.((((((......................)))))).))))))) ( -14.75, z-score = -2.64, R) >droYak2.chr2L 2518933 98 - 22324452 CUUAAAACCUCCCCCUUAAAAUCUCCCGCUUAUA----UCUCUGUUAUAUCUCCCCAUUUACUCGCAUUUUGUCUCUA-------UAUAUUAAUAGCAAAAGGUGAGUG ..................................----.....................(((((((.(((((...(((-------(......))))))))).))))))) ( -11.40, z-score = -2.39, R) >droSec1.super_3 1777002 90 + 7220098 ---------------CUAAAACCUCCUGCUUAUA----UCUCUCUUAUAUCUCCCCAUUUACUCGCAUUUUGUCUCUAAACUUCUUAUAUUAAUAGCAAAAGAUGAGUG ---------------...................----.....................((((((..((((((......................))))))..)))))) ( -7.65, z-score = -1.15, R) >droSim1.chr2L 15281545 90 + 22036055 ---------------CUAAAACCUCCCGCUUAUA----UCUCUCUUAUAUCUCCCCAUUUACUCGCAUUUUGUCUCUAAACUUCUUAUAUUAAUAGCAAAAGGUGAGUG ---------------...................----.....................(((((((.((((((......................)))))).))))))) ( -10.35, z-score = -2.08, R) >consensus _______________CUAAAACCUCCCGCUUAUA____UCUCUCUUAUAUCUCCCCAUUUACUCGCAUUUUGUCUCUAAACUUCUUAUAUUAAUAGCAAAAGGUGAGUG ...........................................................(((((((.((((((......................)))))).))))))) ( -9.65 = -9.85 + 0.20)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 21:43:03 2011