| Sequence ID | dm3.chr2L |
|---|---|
| Location | 15,521,951 – 15,522,016 |
| Length | 65 |
| Max. P | 0.695057 |
| Location | 15,521,951 – 15,522,016 |
|---|---|
| Length | 65 |
| Sequences | 4 |
| Columns | 65 |
| Reading direction | forward |
| Mean pairwise identity | 61.60 |
| Shannon entropy | 0.64265 |
| G+C content | 0.33606 |
| Mean single sequence MFE | -10.57 |
| Consensus MFE | -5.66 |
| Energy contribution | -4.85 |
| Covariance contribution | -0.81 |
| Combinations/Pair | 1.80 |
| Mean z-score | -0.62 |
| Structure conservation index | 0.54 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.44 |
| SVM RNA-class probability | 0.695057 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr2L 15521951 65 + 23011544 UUUAAUAGGUGUUAAGGUAUCAAGUGCAAAUUGGUUAAGGAAAGAAGGGCAUUUAGCCUUAAGCA ........((.(((((((...((((((...((..((....))..))..)))))).))))))))). ( -11.40, z-score = -0.74, R) >droWil1.scaffold_180764 2443675 62 - 3949147 UUUUACAGUU--UGGCUUGUUAUGGUAAGAAUUUAUUGUAAAAGUGGAGCAAUUCCCUCCAGCU- (((((((((.--...((((......)))).....))))))))).(((((.......)))))...- ( -13.00, z-score = -0.94, R) >droSec1.super_3 1775026 65 + 7220098 UUUAAUAGCUAUUACAGUAUCAAGUUCAAAUUGUUUAUGGAAAGAAGGGCAUUUAGCCUUAAGCA .......(((....((....(((.......)))....))......(((((.....))))).))). ( -10.00, z-score = -0.34, R) >droYak2.chr2L 2516844 61 - 22324452 UUUCAUAG----UACAGUAUCGGGAUCAAAUUGUUUAAGGAGAAAAGGGUAUUAAGCCUUAAACA ........----...................(((((((((..((.......))...))))))))) ( -7.90, z-score = -0.47, R) >consensus UUUAAUAG_U__UACAGUAUCAAGUUCAAAUUGUUUAAGGAAAGAAGGGCAUUUAGCCUUAAGCA .............................................(((((.....)))))..... ( -5.66 = -4.85 + -0.81)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 21:43:01 2011