| Sequence ID | dm3.chr2L |
|---|---|
| Location | 1,422,829 – 1,422,899 |
| Length | 70 |
| Max. P | 0.865295 |
| Location | 1,422,829 – 1,422,899 |
|---|---|
| Length | 70 |
| Sequences | 7 |
| Columns | 70 |
| Reading direction | forward |
| Mean pairwise identity | 65.67 |
| Shannon entropy | 0.65354 |
| G+C content | 0.50172 |
| Mean single sequence MFE | -13.41 |
| Consensus MFE | -7.37 |
| Energy contribution | -7.84 |
| Covariance contribution | 0.47 |
| Combinations/Pair | 1.50 |
| Mean z-score | -0.80 |
| Structure conservation index | 0.55 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.97 |
| SVM RNA-class probability | 0.865295 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr2L 1422829 70 + 23011544 CGAGUGUGGAUGCUUCUGCCUUCCCAUUUCCCAUGCUAUACACUCGAAAAAAUUACACAUGUCGAACAGA ((((((((((.((....))..)))(((.....)))....)))))))........................ ( -12.90, z-score = -1.10, R) >droSim1.chr2L 1395984 70 + 22036055 CGAGUGUGGAUGCUUCUGCCUUCCCAUUUCCCAUGCUAUACACUCGAAAAAAUUACACACGUCGGACAGA ((((((((((.((....))..)))(((.....)))....)))))))........................ ( -12.90, z-score = -0.49, R) >droSec1.super_14 1370370 70 + 2068291 CGAGUGUGGAUGCUUCUGCCUUCCCAUUUCCCAUGCUAUACACUCGAAAAAAUUACACAUGUCGAACAGA ((((((((((.((....))..)))(((.....)))....)))))))........................ ( -12.90, z-score = -1.10, R) >droYak2.chr2L 1397747 58 + 22324452 CGAGUGUGGCUGCUUCUGCCUUCCC-AUUUCCAUGCUAUGCACUGGGAGAAAUUACUUA----------- .(((((.(((.......))).....-.(((((((((...))).))))))....))))).----------- ( -13.30, z-score = -0.50, R) >droEre2.scaffold_4929 1465717 59 + 26641161 CGAGUGUGGAUGCUUCUGCCUUCCCAUUUCCCAUGCCACACACUCGAGAAAAUCACCCA----------- ((((((((...((.....................))..)))))))).............----------- ( -13.50, z-score = -2.11, R) >droAna3.scaffold_12916 4885109 59 + 16180835 CGAGUGUGGAUGCUUCUGCCAUCCCGAUUCCCAUAAUCUACACUCGGAGGAAUUUGUCU----------- (((((((((((((....).))))).((((.....)))).))))))).............----------- ( -16.50, z-score = -1.60, R) >droPer1.super_8 1153550 58 + 3966273 UGACUGUGGGUAACCCAGACCCAUCUUGCCGCAUGCCGCAUGCCUCACACCGCCCGGC------------ .....((((((.......))))))..........((((...((........)).))))------------ ( -11.90, z-score = 1.28, R) >consensus CGAGUGUGGAUGCUUCUGCCUUCCCAUUUCCCAUGCUAUACACUCGAAAAAAUUACACA___________ ((((((((...((.....................))..))))))))........................ ( -7.37 = -7.84 + 0.47)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 21:08:33 2011