| Sequence ID | dm3.chr2L |
|---|---|
| Location | 15,493,077 – 15,493,172 |
| Length | 95 |
| Max. P | 0.921408 |
| Location | 15,493,077 – 15,493,172 |
|---|---|
| Length | 95 |
| Sequences | 6 |
| Columns | 117 |
| Reading direction | forward |
| Mean pairwise identity | 78.91 |
| Shannon entropy | 0.35822 |
| G+C content | 0.51331 |
| Mean single sequence MFE | -25.05 |
| Consensus MFE | -16.53 |
| Energy contribution | -16.75 |
| Covariance contribution | 0.22 |
| Combinations/Pair | 1.13 |
| Mean z-score | -2.03 |
| Structure conservation index | 0.66 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 1.29 |
| SVM RNA-class probability | 0.921408 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr2L 15493077 95 + 23011544 UUUCCAGUUGCCAAAUGUUCGUUU----UCUUUUUU--CAUUAUUUGGUAUAUUACCGCACACGCCCUCGCAGUGACCACGCCCACGUGGCAGCACCUCCG---------------- ......(((((((..((..(((..----........--........((((...))))...(((((....)).)))...)))..))..))))))).......---------------- ( -22.10, z-score = -2.77, R) >droAna3.scaffold_12916 7800590 108 + 16180835 UUUUCAGUUGCCAAAUGUUUUUCCGA----UUU-----CUGUGCUGCAUAUUAUGUGGCACACGCCCUCGUGGCGGCCACGCCCACACUGCAACACCUCCGCCCCCAUUGGCAACCG ......((((((((............----...-----.(((((..(((...)))..))))).((....((((((....)).))))...))................)))))))).. ( -32.30, z-score = -2.26, R) >droEre2.scaffold_4929 7239007 96 + 26641161 UUUCCAGUUGCCAAAUGUUCAUUU-----UUUUUUUCACUUUAUUUGGCAUAUUACGGCACACGCCCUCGCAGCGACCACGCCCACGUGGCAGCACCUCCG---------------- ........(((((((((.......-----............)))))))))......(((....)))......((..(((((....)))))..)).......---------------- ( -23.91, z-score = -2.81, R) >droYak2.chr2L 2487000 91 - 22324452 UUUCCAGUUGCCAAAUGUGCAUUUG-----UUU-----CUCUAUUUGGCAUAUUACGGCACACGCCCUCGCAGCGACCACGCCCACGUGGCAGCACCUCCG---------------- ........(((((((((.((....)-----)..-----...)))))))))......(((....)))......((..(((((....)))))..)).......---------------- ( -24.00, z-score = -1.32, R) >droSec1.super_3 1746028 99 + 7220098 UUUCCAGUUGCCAAAUGUUCGUUUGGUUUUUUUUUU--CAUUAUUUGGUAUAUUACGGCACACGCCCUCGCAGCGACCACGCCCACGUGGCAGCACCUCCG---------------- .........(((((((....))))))).........--........(((.......(((....)))......((..(((((....)))))..)))))....---------------- ( -24.00, z-score = -1.47, R) >droSim1.chr2L 15246810 101 + 22036055 UUUCCAGUUGCCAAAUGUUCGUUUGGUUUUUUUUUUUUCAUUAUUUGGUAUAUUACGGCACACGCCCUCGCAGCGACCACGCCCACGUGGCAGCACCUCCG---------------- .........(((((((....)))))))...................(((.......(((....)))......((..(((((....)))))..)))))....---------------- ( -24.00, z-score = -1.57, R) >consensus UUUCCAGUUGCCAAAUGUUCGUUUG____UUUUUUU__CAUUAUUUGGUAUAUUACGGCACACGCCCUCGCAGCGACCACGCCCACGUGGCAGCACCUCCG________________ ......(((((((..((.......................................(((....)))......(((....))).))..)))))))....................... (-16.53 = -16.75 + 0.22)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 21:42:58 2011