| Sequence ID | dm3.chr2L |
|---|---|
| Location | 15,484,111 – 15,484,205 |
| Length | 94 |
| Max. P | 0.776692 |
| Location | 15,484,111 – 15,484,205 |
|---|---|
| Length | 94 |
| Sequences | 5 |
| Columns | 94 |
| Reading direction | forward |
| Mean pairwise identity | 87.33 |
| Shannon entropy | 0.21943 |
| G+C content | 0.35977 |
| Mean single sequence MFE | -20.00 |
| Consensus MFE | -16.36 |
| Energy contribution | -16.96 |
| Covariance contribution | 0.60 |
| Combinations/Pair | 1.08 |
| Mean z-score | -1.69 |
| Structure conservation index | 0.82 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.66 |
| SVM RNA-class probability | 0.776692 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr2L 15484111 94 + 23011544 UUCAAAAUUUCGAUUAUGCUCGCGUGAUAAUUAUGCAUGCAAUCGUAAGCUUCCCUCCUGAAGUAGUUUGACAUACGCAGUAUAAAAUAGUAUU .............(((((((.(((((....(((((........)))))(((((......))))).........))))))))))))......... ( -17.10, z-score = -0.77, R) >droEre2.scaffold_4929 7229955 84 + 26641161 UUCAAAAUUUCGAUUAUGCUCGCGUGAUAAUUAUGCAUGCCAUCCUAAGCUUCCCUUUC--UGGAGU-UGGUAUACGCAGUAUAAAA------- .............((((((((((((((...))))))(((((((((.(((.....)))..--.)))..-))))))..).)))))))..------- ( -18.30, z-score = -1.49, R) >droYak2.chr2L 2477085 85 - 22324452 UUCAAAAUUUCGAUUAUGCUCGCGUGAUAAUUAUGCAUGCAAUCGUAAGCUUCCCUUUC--UGGAGUAUGGAAUACGCAGUAUAAAA------- .............(((((((.(((((....((((((..((........)).(((.....--.)))))))))..))))))))))))..------- ( -17.90, z-score = -0.88, R) >droSec1.super_3 1736268 94 + 7220098 UUCAAAAUUUCGAUUAUGCUCGCGUGAUAAUUAUGCAUGCAAUCGUAAGCUUCCCUCCAAAAGGAGUUUGGAAUACGCAGUAUAAAAUAAUAUU .............(((((((.(((((........((.(((....))).))((((((((....))))...))))))))))))))))......... ( -23.00, z-score = -2.78, R) >droSim1.chr2L 15237887 94 + 22036055 UUCAAAAUUUCGAUUAUGCUCGCGUGAUAAUUAUGCAUGCAAUCGUAAGCUUCCCUCCAAAAGGAGUUGGGAAUACGCAGUAUAAAAUAGUAUU .............(((((((.(((((........((.(((....))).))((((((((....)))...)))))))))))))))))......... ( -23.70, z-score = -2.50, R) >consensus UUCAAAAUUUCGAUUAUGCUCGCGUGAUAAUUAUGCAUGCAAUCGUAAGCUUCCCUCCA_AAGGAGUUUGGAAUACGCAGUAUAAAAUA_UAUU .............(((((((.(((((........((.(((....))).))((((((((....))))...))))))))))))))))......... (-16.36 = -16.96 + 0.60)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 21:42:55 2011