| Sequence ID | dm3.chr2L |
|---|---|
| Location | 15,422,892 – 15,422,987 |
| Length | 95 |
| Max. P | 0.976946 |
| Location | 15,422,892 – 15,422,987 |
|---|---|
| Length | 95 |
| Sequences | 7 |
| Columns | 108 |
| Reading direction | forward |
| Mean pairwise identity | 78.28 |
| Shannon entropy | 0.39428 |
| G+C content | 0.44321 |
| Mean single sequence MFE | -26.36 |
| Consensus MFE | -17.05 |
| Energy contribution | -16.71 |
| Covariance contribution | -0.34 |
| Combinations/Pair | 1.67 |
| Mean z-score | -2.27 |
| Structure conservation index | 0.65 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 1.96 |
| SVM RNA-class probability | 0.976946 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr2L 15422892 95 + 23011544 -------CGCAGUCGCAGUUGCAG----UUGCAAUUGCAGCUGCGCCAAUUCUCCU-CUGGUUUGCCGUUUGCAUUUC-GGCGCUUUACGUUCAAAACAAUUAUUAUU -------.(((((.((((((((..----..)))))))).)))))((((........-.))))..((((.........)-))).......................... ( -28.90, z-score = -2.15, R) >droWil1.scaffold_180764 2317116 106 - 3949147 -CGCAGUUGCAGUUGCAGCUGCAGCCAAUUCUCCUUAUAGUUUUUUUUGUUGUCUU-UUGGUUUUUUACUUACAUAUCUGGCGCUUUACGUUCAAAACAAUUAUUAUU -.((((((((....))))))))((((((........((((......))))......-))))))................((((.....))))................ ( -19.24, z-score = -0.74, R) >droMoj3.scaffold_6500 20810818 83 + 32352404 -------------CGCAGUUGCAA----UUGCAGUUGCAGCUGCACCAAUUCUCCUUCUCGUUUGCCGUUU--------GGCGCUUUACGUUCAAAACAAUUAUUAUU -------------.((((((((((----(....)))))))))))...............(((.((((....--------))))....))).................. ( -22.50, z-score = -2.56, R) >droVir3.scaffold_12963 12098758 81 + 20206255 -------------CGCAGUUGCAA----UUGCAGUUGCAGCUGCGCCAAUUCUCCU-UCG-UUUGCCGUUU--------GGCGCUUUACGUUCAAAACAAUUAUUAUU -------------(((((((((((----(....))))))))))))...........-.((-(.((((....--------))))....))).................. ( -23.30, z-score = -2.15, R) >droSim1.chr2L 15182362 95 + 22036055 -------CGCAGUCGCAGUUGCAG----UUGCAAUUGCAGCUGCGCCAAUUCUCCU-CCGGUUUGCCGUUUGCAUUUC-GGCGCUUUACGUUCAAAACAAUUAUUAUU -------((((((.((((((((..----..)))))))).)))))).........(.-((((..(((.....)))..))-)).)......................... ( -29.90, z-score = -2.61, R) >droSec1.super_3 1682938 95 + 7220098 -------CGCAGUCGCAGUUGCAG----UUGCAAUUGCAGCUGCGCCAAUUCUCCU-CCGGUUUGCCGUUUUCAUUUC-GGCGCUUUACGUUCAAAACAAUUAUUAUU -------.(((((.((((((((..----..)))))))).)))))(((.........-.(((....)))..........-))).......................... ( -28.85, z-score = -3.15, R) >droYak2.chr2L 2421724 101 - 22324452 ACGCAGUCGCAGUCGCAGUUGCAG----UUGCAAUUGCAGCUGCGCCAAUUCUCCU-CCGGUU-GCCGUUUGCAUUUC-GGUGCUUUACGUUCAAAACAAUUAUUAUU ..((((.((((((.((((((((..----..)))))))).)))))).).........-((((.(-((.....)))..))-)))))........................ ( -31.80, z-score = -2.56, R) >consensus _______CGCAGUCGCAGUUGCAG____UUGCAAUUGCAGCUGCGCCAAUUCUCCU_CCGGUUUGCCGUUUGCAUUUC_GGCGCUUUACGUUCAAAACAAUUAUUAUU ..............((((((((((....))))))))))....(((((...........(((....)))...........)))))........................ (-17.05 = -16.71 + -0.34)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 21:42:51 2011