| Sequence ID | dm3.chr2L |
|---|---|
| Location | 15,415,622 – 15,415,720 |
| Length | 98 |
| Max. P | 0.977598 |
| Location | 15,415,622 – 15,415,720 |
|---|---|
| Length | 98 |
| Sequences | 6 |
| Columns | 104 |
| Reading direction | forward |
| Mean pairwise identity | 74.56 |
| Shannon entropy | 0.47154 |
| G+C content | 0.29991 |
| Mean single sequence MFE | -18.12 |
| Consensus MFE | -12.78 |
| Energy contribution | -13.78 |
| Covariance contribution | 1.00 |
| Combinations/Pair | 1.19 |
| Mean z-score | -1.73 |
| Structure conservation index | 0.71 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 1.98 |
| SVM RNA-class probability | 0.977598 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr2L 15415622 98 + 23011544 AUAAAAUAAAUAGCCCUAACUUAAACAAUAAAUUAUCUUGAUAUAUUAUUGGCAGUCUAGACAAAUGACUCGGGUUAUUUGUCAGCAAUUGAACACAU------ .....(((((((((((.........((((((..(((....)))..))))))(.((((.........))))))))))))))))................------ ( -19.10, z-score = -2.50, R) >droEre2.scaffold_4929 7165533 98 + 26641161 AUAAAAUAAAUAGCCCUAGUUUGAACAAUAACUUAUCUUGAUGUAUUAUUGGCAGCCUAGACAAAUGACUUGGGUUAUUUGUCAGCAAUUGAACACAU------ ..................(((..(.((((((..(((....)))..))))))...((...((((((((((....)))))))))).))..)..)))....------ ( -21.20, z-score = -1.84, R) >droYak2.chr2L 2414389 89 - 22324452 -------AAAUAGCACUG--UUAAACAAUAACUUAUCGUGAUAUAUUAUUGGCAGCCCGGACAAAUGACUUGAGUUAUUUGUCAGCAAUUGAACACAU------ -------.....((.(((--(....((((((..(((....)))..))))))))))....((((((((((....)))))))))).))............------ ( -20.90, z-score = -2.61, R) >droSec1.super_3 1675766 98 + 7220098 AUAAAGUAAAUAGCCCUAAUUUAAACAAUAAAUUAUCUUGAUAUAUUAUUGGCAGCCUAGACAAAUGACUUGGGUUAUUUGUCAGCAAUUGAACACAU------ .....((.(((.((...........((((((..(((....)))..))))))........((((((((((....)))))))))).)).)))..))....------ ( -17.90, z-score = -1.27, R) >droSim1.chr2L 15175084 98 + 22036055 AUAAAGUAAAUAGCCCUAAUUUAAACAAUAAAUUAUCUUGAUAUAUUAUUGGCAGCCUAGACAAAUGACUUGGGUUAUUUGUCAGCAAUUGAACACAU------ .....((.(((.((...........((((((..(((....)))..))))))........((((((((((....)))))))))).)).)))..))....------ ( -17.90, z-score = -1.27, R) >droGri2.scaffold_15126 5615686 90 + 8399593 ----AUCACACAGCUUU----UGAGUCAUAUAUCAUAUU-----ACUAUAGAUCGUAUAAAAAAGCUAAUCAGACU-UUUCUUAGCAUAUCUACAUAAGUCUCU ----.......((((((----(.....(((((((.(((.-----...)))))).))))..)))))))....(((((-(....(((.....)))...)))))).. ( -11.70, z-score = -0.88, R) >consensus AUAAAAUAAAUAGCCCUAAUUUAAACAAUAAAUUAUCUUGAUAUAUUAUUGGCAGCCUAGACAAAUGACUUGGGUUAUUUGUCAGCAAUUGAACACAU______ ............((...........((((((..(((....)))..))))))........((((((((((....)))))))))).)).................. (-12.78 = -13.78 + 1.00)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 21:42:50 2011