| Sequence ID | dm3.chr2L |
|---|---|
| Location | 15,412,515 – 15,412,614 |
| Length | 99 |
| Max. P | 0.963780 |
| Location | 15,412,515 – 15,412,614 |
|---|---|
| Length | 99 |
| Sequences | 11 |
| Columns | 103 |
| Reading direction | forward |
| Mean pairwise identity | 81.73 |
| Shannon entropy | 0.37974 |
| G+C content | 0.45179 |
| Mean single sequence MFE | -32.01 |
| Consensus MFE | -20.27 |
| Energy contribution | -19.83 |
| Covariance contribution | -0.44 |
| Combinations/Pair | 1.18 |
| Mean z-score | -2.27 |
| Structure conservation index | 0.63 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 1.73 |
| SVM RNA-class probability | 0.963780 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr2L 15412515 99 + 23011544 ----UUGCCUUUUGCACGCGCUAUACUUUGACGCUAAUGAGUGUCAAAGUUGAUAGUUUGAUUUUGGCAAAUGGCAUAAUUGGUCAUGGCCAGUCCGCCGGCA ----.((((.(((((.((.((((((((((((((((....)))))))))))..))))).))......))))).(((...((((((....))))))..))))))) ( -37.50, z-score = -3.43, R) >droSim1.chr2L 15172023 99 + 22036055 ----UUGCCUUUUGCACGCGCUAUACUUUGACGCUAAUGAGUGUCAAAGUUGAUAGUUUGAUUUUGGCAAAUGGCAUAAUUGGUCAUGGCCAGUCCGCCGGCA ----.((((.(((((.((.((((((((((((((((....)))))))))))..))))).))......))))).(((...((((((....))))))..))))))) ( -37.50, z-score = -3.43, R) >droSec1.super_3 1672643 99 + 7220098 ----UUGCCUUUUGCACGCGCUAUACUUUGACGCUAAUGAGUGUCAAAGUUGAUAGUUUGAUUUUGGCAAAUGGCAUAAUUGGUCAUGGCCAGUCCGCCGGCA ----.((((.(((((.((.((((((((((((((((....)))))))))))..))))).))......))))).(((...((((((....))))))..))))))) ( -37.50, z-score = -3.43, R) >droYak2.chr2L 2411327 99 - 22324452 ----UUGCCUUUUACACGCGCUAUAAUUUGACGCUAAUGAGUGUCGAAGUUGAUAGUUUGAUUUUGGCAAAUGGCCUAAUUGGUCAUGGCUUACCCGCCGGUA ----(((((.......((.(((((..(((((((((....)))))))))....))))).)).....)))))((((((.....))))))(((......))).... ( -32.50, z-score = -2.91, R) >droEre2.scaffold_4929 7162420 99 + 26641161 ----UUGCCUUUUGCACGCGCUAUAAUUUGACGCUAAUGAGUGUCGAAGUUGAUAGUUUGAUUUUGGCAAAUGGCCUAAUUGGUCAUGGCCAGCCCGCCGGCA ----.((((....((.((.(((((..(((((((((....)))))))))....))))).))...(((((..((((((.....)))))).)))))...)).)))) ( -35.30, z-score = -2.46, R) >droAna3.scaffold_12916 7717760 99 + 16180835 ----AUGCCUCUUGCACGCGCUAUAAUUUGACGCUAAUGAGUGUCAAAGUUGAUAGUUUGAUUUUGGCAAAUGGCAUAAUUGGUCAUGGCCAGCCAGAAGGCG ----..((((((.((.((.(((((..(((((((((....)))))))))....))))).))....((((..(((((.......))))).)))))).)).)))). ( -35.90, z-score = -3.16, R) >dp4.chr4_group4 4197045 95 - 6586962 ----UUGCCUCCUGCACGCGCUAUAAUUUGACGCUAAUGAGUGUCAAAGUUGAUAGUUUGAUUCUGGCAAAUGGCAUAAUUGCUCGGGGACCUUUGGAC---- ----(((((.....((...(((((..(((((((((....)))))))))....))))).)).....)))))..((((....)))).(....)........---- ( -25.40, z-score = -0.91, R) >droVir3.scaffold_12963 12085300 98 + 20206255 CCGCCUGUCUUUUGCUCGCGCUGUAAUUUGACGCUAAUGAGUGUCAAAGUUGAUAGUUUGAUUUUGGCAAAUGGCGUAAUUG--UGCACCACAACGAACA--- .((((.....((((((((.(((((..(((((((((....)))))))))....))))).))).....))))).))))...(((--((...)))))......--- ( -27.80, z-score = -1.35, R) >droMoj3.scaffold_6500 20796894 98 + 32352404 CUGUCAAUCCUCUGCACGCGCUGUAAUUUGACGCUAAUGAGUGUCAAAGUUGAUAGUUUGAUUUUAGCAAAUGGCGUAAUUG--UGCACCGCGCCAACCA--- ((((((((....((((.....)))).(((((((((....)))))))))))))))))...............((((((.....--......))))))....--- ( -25.90, z-score = -0.85, R) >droGri2.scaffold_15126 5612684 98 + 8399593 CUGCCUGUCUCUUGCACGCACUGUAAUUUGACGCUAAUGAGUGUCAAAGUUGAUAGUUUGAUUUUGGCAAAUGGCGUAAUUG--CGCCGUCCAACAAGCA--- ..((.(((........((.(((((..(((((((((....)))))))))....))))).))....(((...(((((((....)--)))))))))))).)).--- ( -30.40, z-score = -1.89, R) >droPer1.super_10 2033620 95 - 3432795 ----UUGCCUCCUGCACGCGCUAUAAUUUGACGCUAAUGAGUGUCAAAGUUGAUAGUUUGAUUCUGGCAAAUGGCAUAAUUGCUCGGGGACCUCUGGAC---- ----(((((.....((...(((((..(((((((((....)))))))))....))))).)).....)))))..((((....))))((((....))))...---- ( -26.40, z-score = -1.18, R) >consensus ____UUGCCUUUUGCACGCGCUAUAAUUUGACGCUAAUGAGUGUCAAAGUUGAUAGUUUGAUUUUGGCAAAUGGCAUAAUUGGUCAUGGCCAGCCCGCCGG__ ......(((...(((.((.(((((..(((((((((....)))))))))....))))).))......)))...)))............................ (-20.27 = -19.83 + -0.44)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 21:42:50 2011