| Sequence ID | dm3.chr2L |
|---|---|
| Location | 15,397,716 – 15,397,813 |
| Length | 97 |
| Max. P | 0.922273 |
| Location | 15,397,716 – 15,397,813 |
|---|---|
| Length | 97 |
| Sequences | 5 |
| Columns | 108 |
| Reading direction | forward |
| Mean pairwise identity | 81.51 |
| Shannon entropy | 0.31012 |
| G+C content | 0.35340 |
| Mean single sequence MFE | -18.28 |
| Consensus MFE | -14.64 |
| Energy contribution | -15.12 |
| Covariance contribution | 0.48 |
| Combinations/Pair | 1.04 |
| Mean z-score | -1.79 |
| Structure conservation index | 0.80 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 1.29 |
| SVM RNA-class probability | 0.922273 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr2L 15397716 97 + 23011544 -----------CUUGAUUUUUUUUUCUUCUUUUUUUUUUGACUUGUUGUUUUGCAUGUUCCUGGCGUCUGCUUUAUGUGCAACAUGGUCACAUAAACAAGAUCAAUCC -----------................((((.(((...(((((((((((...(((((.....(((....))).))))))))))).)))))...))).))))....... ( -18.00, z-score = -1.63, R) >droEre2.scaffold_4929 7147182 105 + 26641161 CUUGAUUUUUGUUUCAUUUUUUUUUUGUCUUUUUAUGUUGGCUUGUU---UUGCAUGUUCCUGGCGUCUGCUUUAUGUGCAACAUGGUCACAUAAACAAGAUCAAUCC ..(((........)))........((((((((((((((.((((....---((((((((....(((....)))..))))))))...))))))))))).)))).)))... ( -23.00, z-score = -2.24, R) >droYak2.chr2L 2396421 81 - 22324452 ------------------------CUUGCUUUUUUUUCUUCCUUGUU---UUGCAUGUUCCUGGCGUCUGCUUUAUGUGCAACAUGCUCACAUAAACAAGAUCAAUCC ------------------------.................((((((---(.(((((((((.(((....)))....).).)))))))......)))))))........ ( -14.80, z-score = -1.42, R) >droSec1.super_3 1657786 93 + 7220098 -----------CUUGAUUUUUUCUUUAU-UUUUUUUUUUGACUUGUU---UUGCAUGUUCCUGGCGUCUGCUUUAUGUGCAACAUGGUCACAUAAACAAGAUCAAUCC -----------.................-........((((((((((---((((((((....(((....)))..)))))))..(((....)))))))))).))))... ( -17.50, z-score = -1.73, R) >droSim1.chr2L 15157097 90 + 22036055 -----------CUUGAUUUUUUCUUCUU----UUUUUUUGACUUGUU---UUGCAUGUUCCUGGCGUCUGCUUUAUGUGCAACAUGGUCACAUAAACAAGAUCAAUCC -----------...((((...((((.((----(.....(((((....---((((((((....(((....)))..))))))))...)))))...))).))))..)))). ( -18.10, z-score = -1.95, R) >consensus ___________CUUGAUUUUUUCUUUUUCUUUUUUUUUUGACUUGUU___UUGCAUGUUCCUGGCGUCUGCUUUAUGUGCAACAUGGUCACAUAAACAAGAUCAAUCC .....................................((((((((((...((((((((....(((....)))..)))))))).(((....))).)))))).))))... (-14.64 = -15.12 + 0.48)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 21:42:45 2011