| Sequence ID | dm3.chr2L |
|---|---|
| Location | 15,395,587 – 15,395,688 |
| Length | 101 |
| Max. P | 0.560483 |
| Location | 15,395,587 – 15,395,688 |
|---|---|
| Length | 101 |
| Sequences | 6 |
| Columns | 106 |
| Reading direction | forward |
| Mean pairwise identity | 69.08 |
| Shannon entropy | 0.57946 |
| G+C content | 0.50364 |
| Mean single sequence MFE | -29.05 |
| Consensus MFE | -11.17 |
| Energy contribution | -13.01 |
| Covariance contribution | 1.84 |
| Combinations/Pair | 1.32 |
| Mean z-score | -1.54 |
| Structure conservation index | 0.38 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.14 |
| SVM RNA-class probability | 0.560483 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr2L 15395587 101 + 23011544 UAUUGGGUUUUUGAUAC----GUUAACCAAAGGGCUAAGA-AACAGAAAGAGCAGAAAGAGCGACGGUGGUUGUAGCUGUGGCAGUGGCAACAGCGACCGACAUUG ..((((.((((((....----......)))))).))))..-..........((.......))..((((.(((((.((..(....)..)).))))).))))...... ( -25.00, z-score = -0.87, R) >droSim1.chr2L 15154934 100 + 22036055 UAUUGGCUUUUUGAUAC----GUUAACCAAAGGGCCAAGA-AACAGUC-GAGCAGAAAGAGCGACGGUGGCUGUGGCUCUGGCAGUGGCAACAGCGACCGACAUUG ..(((((((((((....----......)))))))))))..-....(((-(.((....(((((.((((...)))).))))).)).((.((....)).)))))).... ( -36.10, z-score = -2.75, R) >droSec1.super_3 1655636 100 + 7220098 UAUUGGCUUUUUGAUAC----GUUAACCAAAGGGCCAAGA-AACAGUC-GAGCAGAAAGAGCGACGGUGGCUGUGGCUUUGGCAGUGGCAACAGCGACCGACAUUG ..(((((((((((....----......)))))))))))..-....(((-(..(.....)..))))(((.(((((.(((........))).))))).)))....... ( -36.40, z-score = -3.15, R) >droEre2.scaffold_4929 7145061 91 + 26641161 UAUUGGCUUUUUGAUAC----GUUAACCAAAGGGCCAGGA-GACCGUC-GAGCAGAAAGAGCGGUGGUAGU---------GGCAGUGGCAACAGCGACCGACAUUG ...((((((((((....----......))))))))))(..-..).(((-..((.......))(((.((.((---------.((....)).)).)).)))))).... ( -27.30, z-score = -1.42, R) >droAna3.scaffold_12916 7701168 103 + 16180835 UAUUGGCUUUUUGAUACAUACGUUGACCAAAGGGCCAGGCUAAGAGCUUAAGAAGCUAAGGCUUCACCAGUUG---CUGCAGCCUCAGCCACAGCGACCGACAUUG ....(((((((((...((.....))..)))))))))((((.....))))..(((((....)))))....((((---(((..((....))..)))))))........ ( -31.70, z-score = -1.68, R) >droVir3.scaffold_12963 12068005 83 + 20206255 UAUUGAAUUUUUGAUAC--GCGUUGGCCAAAAGGGCUCGG-AACAGUGGCAGCUACGACGACGUCGACAAC----------AUUGUGGCGACAUUG---------- .................--.((..((((.....)))))).-..(((((...(((((((.(..(....)..)----------.)))))))..)))))---------- ( -17.80, z-score = 0.65, R) >consensus UAUUGGCUUUUUGAUAC____GUUAACCAAAGGGCCAAGA_AACAGUC_GAGCAGAAAGAGCGACGGUAGCUG___CU_UGGCAGUGGCAACAGCGACCGACAUUG ..(((((((((((..............)))))))))))..........................((((.((((..................)))).))))...... (-11.17 = -13.01 + 1.84)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 21:42:43 2011