| Sequence ID | dm3.chr2L |
|---|---|
| Location | 15,393,501 – 15,393,594 |
| Length | 93 |
| Max. P | 0.748486 |
| Location | 15,393,501 – 15,393,594 |
|---|---|
| Length | 93 |
| Sequences | 6 |
| Columns | 105 |
| Reading direction | forward |
| Mean pairwise identity | 63.59 |
| Shannon entropy | 0.68199 |
| G+C content | 0.54785 |
| Mean single sequence MFE | -22.32 |
| Consensus MFE | -7.45 |
| Energy contribution | -9.12 |
| Covariance contribution | 1.67 |
| Combinations/Pair | 1.23 |
| Mean z-score | -1.62 |
| Structure conservation index | 0.33 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.58 |
| SVM RNA-class probability | 0.748486 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr2L 15393501 93 + 23011544 UUAGCUAAUGGCCACCAGGCCAACACUCUGCUCC------------UCCCAAUCCCCGUCUGCCCCAUGGGCACACCAUUUCCCCCUUCACAUGUGGCCAAAAUG ........(((((((((((.......))))....------------...........((.(((((...))))).)).................)))))))..... ( -21.90, z-score = -1.51, R) >droSim1.chr2L 15152936 96 + 22036055 UUAGCUAAUGGCCACCAGGCCACCACCACUCUGCUC---------CUCCCAAACCCCGUCUGCCCGAUGGGCACUCCAUUUCCCCCUUCACAUGUGGCCAAAAUG ........(((((((..((......)).........---------.........((((((.....))))))......................)))))))..... ( -22.40, z-score = -1.51, R) >droSec1.super_3 1653649 96 + 7220098 UUAGCUAAUGGCCACCAAGCCACCACCACUCUGCUC---------CUCCCAAUCCCCGUCUGCCCGAUGGGCACUCCAUUUCCCCCUUAACAUGUGGCUAAAAUG (((((((.((((......))))..............---------.........((((((.....)))))).......................))))))).... ( -20.00, z-score = -1.74, R) >droEre2.scaffold_4929 7143029 105 + 26641161 UUAGCUAAUGGCCACCAGGCCACCAUCCAGCUCCAGCUCCAGCUGCUCCCAAUCCCCUUCUGCCCCAUGGCCACACCAUUUCCCCCUUCAAAUGUGGCCAAAAUG .(((((..(((((....)))))......(((....)))..)))))......................((((((((.................))))))))..... ( -26.63, z-score = -2.82, R) >droAna3.scaffold_12916 7699214 91 + 16180835 UUAGCUAAUGGCCACUAAGCCAUUGAGGAGGAGGUG--------GCCCCCAACUCCUGU--GCCUUAUGGGCACA----UUUUUCCCGCACAUGUGUCCGCAAUG ...(((((((((......))))))).(((((((.((--------(...))).))))(((--(((.....))))))----.......(((....)))))))).... ( -31.40, z-score = -1.49, R) >droWil1.scaffold_180764 2268916 89 - 3949147 UUACCAAAAAGCGACUCUAACACCAACACCAACUCCAU-------CUAUUAAUGCCCUCUGGC---AGAAAACUAGCGUUUUCUCUCCCACAUGCCGGG------ ............................((........-------.......((((....)))---)((((((....)))))).............)).------ ( -11.60, z-score = -0.69, R) >consensus UUAGCUAAUGGCCACCAGGCCACCACCACGCUCCUC_________CUCCCAAUCCCCGUCUGCCCCAUGGGCACACCAUUUCCCCCUUCACAUGUGGCCAAAAUG ...((((.(((((....)))))......................................((((.....)))).....................))))....... ( -7.45 = -9.12 + 1.67)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 21:42:42 2011