| Sequence ID | dm3.chr2L |
|---|---|
| Location | 15,388,940 – 15,389,034 |
| Length | 94 |
| Max. P | 0.925323 |
| Location | 15,388,940 – 15,389,034 |
|---|---|
| Length | 94 |
| Sequences | 9 |
| Columns | 99 |
| Reading direction | forward |
| Mean pairwise identity | 82.69 |
| Shannon entropy | 0.37019 |
| G+C content | 0.51868 |
| Mean single sequence MFE | -28.89 |
| Consensus MFE | -18.67 |
| Energy contribution | -19.07 |
| Covariance contribution | 0.40 |
| Combinations/Pair | 1.12 |
| Mean z-score | -2.02 |
| Structure conservation index | 0.65 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 1.31 |
| SVM RNA-class probability | 0.925323 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr2L 15388940 94 + 23011544 CCGACGUGUGCGGUAGAAUGCACGAAUGCGUUCAAUAUAAUGAAAUUCAUUUGUUGAAUGU--CCGUC--UGCCCGGGCGG-GGCUCAUCCCCUCCACG ..((((((((((......))))))...((((((((((.((((.....))))))))))))))--.))))--....((((.((-((.....)))).)).)) ( -33.10, z-score = -2.15, R) >droSim1.chr2L 15148332 94 + 22036055 CCGACGUGUGCGGUAGAAUGCACGAAUGCGUUCAAUAUAAUGAAAUUCAUUUGUUGAAUGU--CCGUC--UGCCCGGGCGG-GGCUCAUCCCCUCCUCG ..((((((((((......))))))...((((((((((.((((.....))))))))))))))--.))))--....((((.((-((.....)))).)).)) ( -33.10, z-score = -2.38, R) >droSec1.super_3 1649035 94 + 7220098 CCGACGUGUGCGGUAGAAUGCACGAAUGCGUUCAAUAUAAUGAAAUUCAUUUGUUGAAUGU--CCGUC--UGCCCGGGCGG-GGCUCAUCCCCUCCUCG ..((((((((((......))))))...((((((((((.((((.....))))))))))))))--.))))--....((((.((-((.....)))).)).)) ( -33.10, z-score = -2.38, R) >droYak2.chr2L 2387482 94 - 22324452 CCGACGUGUGCGGUAGAAUGCACGAAUGGUUUCAAUAUAAUGAAAUUCAUUUGUUGGAUGU--CCGUC--UGCCCGGGCGG-GGCUCCUCCCCUACACG ....((((((.((((((....(((((((((((((......))))).)))))))).((....--)).))--)))).(((.((-(....)))))))))))) ( -33.40, z-score = -2.02, R) >droEre2.scaffold_4929 7138462 94 + 26641161 UCGACGUGUGCGGUAGAAUGCACGAAUGCGUUCAAUAUAAUGAAAUUCAUUUGUUGAAUGU--CCGUC--UGCCCGGGCGG-AGCUCCUCCCCGCCACG ....((((.((((......((.......(((((((((.((((.....)))))))))))))(--(((((--(....))))))-)))......)))))))) ( -34.80, z-score = -3.14, R) >droAna3.scaffold_12916 7694909 95 + 16180835 CCGACGUGUGCGGUAGAAUGCACGAAUGCGUUCAAUAUAAUGAAAUUCAUUUGUUGAAUGU--CCGUC--UGCCCGGAAAGUGGCCCAUCCCUUUGCCA ..((((((((((......))))))...((((((((((.((((.....))))))))))))))--.))))--.....((((((.((.....)))))).)). ( -28.30, z-score = -2.22, R) >dp4.chr4_group4 4176087 97 - 6586962 CCGACGUGUGCGGUAGAAUGCACGAAUGCGUCCAAUAUAAUGAAAUUCAUUUGUUGGAUGUCCCCACCCCUGACCCCUCGG--CCCCACCUGCUCUGCG ((((..((((((......))))))...((((((((((.((((.....))))))))))))))................))))--................ ( -24.40, z-score = -1.62, R) >droPer1.super_10 2012354 96 - 3432795 CCGACGUGUGCGGUAGAAUGCACGAAUGCGUCCAAUAUAAUGAAAUUCAUUUGUUGGAUGUCCCCACCCCUGACCCCUCGG--CCCCACCUGCUCUGC- ((((..((((((......))))))...((((((((((.((((.....))))))))))))))................))))--...............- ( -24.40, z-score = -1.61, R) >droVir3.scaffold_12963 12061219 77 + 20206255 CCAACGUGUGCGGUAGAAUGCACGAAUGCGUUCAAUAUAAUGAAAUUCAUUUGUUCAAUGUGUCUGUC--UACCCUGUC-------------------- .....(((.((((((.(.((.(((((((..((((......))))...))))))).)).).)).)))).--)))......-------------------- ( -15.40, z-score = -0.63, R) >consensus CCGACGUGUGCGGUAGAAUGCACGAAUGCGUUCAAUAUAAUGAAAUUCAUUUGUUGAAUGU__CCGUC__UGCCCGGGCGG_GGCUCAUCCCCUCCACG ..((((((((((......))))))...((((((((((.((((.....))))))))))))))...))))............................... (-18.67 = -19.07 + 0.40)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 21:42:40 2011