| Sequence ID | dm3.chr2L |
|---|---|
| Location | 15,388,639 – 15,388,746 |
| Length | 107 |
| Max. P | 0.747606 |
| Location | 15,388,639 – 15,388,746 |
|---|---|
| Length | 107 |
| Sequences | 11 |
| Columns | 118 |
| Reading direction | reverse |
| Mean pairwise identity | 74.03 |
| Shannon entropy | 0.53598 |
| G+C content | 0.58278 |
| Mean single sequence MFE | -39.78 |
| Consensus MFE | -21.05 |
| Energy contribution | -20.75 |
| Covariance contribution | -0.30 |
| Combinations/Pair | 1.38 |
| Mean z-score | -1.23 |
| Structure conservation index | 0.53 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.57 |
| SVM RNA-class probability | 0.747606 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr2L 15388639 107 - 23011544 -----GGCCCUCUGAUUCUGCUUCUGCGCGGGCGUUCAUUAACAGCAACCUGUUGAGUGUU---CCGGCCAGGGCGACAAACGUUGCCUUUUCGGGCAGU---CGAGUGGUGGUGCUC -----(((((.((.((((.....((((.(((.((..(((((((((....))))))).))..---.)).))((((((((....))))))))...).)))).---.)))))).)).))). ( -38.00, z-score = -0.11, R) >droSim1.chr2L 15148036 107 - 22036055 -----GGCCCUCUCAUUCUGCUUCUGCGCGGGCGUUCAUUAACAGCAACCUGUUGAGUGUU---CCGGCCAGGGCGACAAACGUUGCCUUUUCGGGCAGU---CGAGUGGUGGUGCUC -----(((((.(.(((((.....((((.(((.((..(((((((((....))))))).))..---.)).))((((((((....))))))))...).)))).---.)))))).)).))). ( -40.30, z-score = -1.02, R) >droSec1.super_3 1648739 107 - 7220098 -----GGCCCUCUCAUUCUGCUUCUGCGCGGGCGUUCAUUAACAGCAACCUGUUGAGUGUU---CCGGCCAGGGCGACAAACGUUGCCUUUUCGGGCAGU---CGAGUGGUGGUGCUC -----(((((.(.(((((.....((((.(((.((..(((((((((....))))))).))..---.)).))((((((((....))))))))...).)))).---.)))))).)).))). ( -40.30, z-score = -1.02, R) >droYak2.chr2L 2387188 106 + 22324452 ------GGUCUCUGAUUCUGCUUCUGCGCGGGCGUUCAUUAACAGCAACCUGUUGAGUGUU---CCGGCCAAGGCGACAAACAUUGCCUUUUCGGGCAGC---CGAGUGGUGGUGCUG ------(((..(.....(..(((((((.(((.((..(((((((((....))))))).))..---.)).))(((((((......)))))))...).)))).---.)))..).)..))). ( -32.60, z-score = 0.87, R) >droEre2.scaffold_4929 7138159 107 - 26641161 -----GGCCCUCGCAUUCUGCUUCUGCGCGGGCGUUCAUUAACAGCAACCUGUUGAGUGUU---CCGGCCAGGGCGACAAACGUUGCCUUUUCGGGCAGU---CGAGUGGUGGUGCUG -----.((((.((((.........)))).)))).........((((((((..((((.(((.---((((..((((((((....)))))))).))))))).)---)))..)))..))))) ( -45.40, z-score = -1.96, R) >droAna3.scaffold_12916 7694604 107 - 16180835 CACCCUUGCAUUUUAGCCGUCUUCUGCGCGGGCGUUCAUUAACAGCAACCUGUUGAGUGUUG---CAGUCGGGGCGACAAACGUUGCCUUUUGUGGCGGU---CGCGUUGGGG----- ..((((.((.......((((.......))))(((..(.(((((((....)))))))..((..---(((..((((((((....)))))))))))..)))..---))))).))))----- ( -39.10, z-score = -0.83, R) >dp4.chr4_group4 4175854 108 + 6586962 ------UGCCCCUGCCCCUGCCGCUGCGCGGGCGUUCAUUAACAGCAACCUGUUGAGUGUU---GCGGCCGGGGCGACAAACGUUGCCUUUUCGGGCAGUGCGCGAACAAUGGGGCC- ------.(((((.((((.(((....))).))))((((.(((((((....)))))))(..((---((..((((((((((....)))))))...)))))))..)..))))...))))).- ( -51.80, z-score = -1.61, R) >droPer1.super_10 2012128 109 + 3432795 ------GGCCCCUGCCCCUGCCUCUGCGCGGGCGUUCAUUAACAGCAACCUGUUGAGUGUU---GCGGCCGGGGCGACAAACGUUGCCUUUUCGGGCAGUGCGCGAACAAUGGGGCCC ------((((((.((((.(((....))).))))((((.(((((((....)))))))(..((---((..((((((((((....)))))))...)))))))..)..))))...)))))). ( -55.10, z-score = -2.60, R) >droWil1.scaffold_180764 2257806 100 + 3949147 ------CGCUUUUGCACUCAUCACUGCGCGGGCGUUCAUUAACAGCAACCUGUUGAGUUUCGGCUGAGUUGGGGCGACAAACGUUGCCUUUUGUGGUAGU---CGGAUU--------- ------((((..((((........))))..))))....(((((((....)))))))..((((((((....((((((((....))))))))......))))---))))..--------- ( -34.20, z-score = -1.40, R) >droMoj3.scaffold_6500 20771580 86 - 32352404 ------AGCCACAAAAGAACACUCUGCGCGGGCGUUCAUUAACAGCAACCUGUUGAGCCA-----UCGUCGGGGCGACAAACGUUGCCUUUUAUGGC--------------------- ------.((((.(((((....(((.(((..(((.....(((((((....)))))))))).-----.))).)))(((((....)))))))))).))))--------------------- ( -28.80, z-score = -1.69, R) >droGri2.scaffold_15126 5589487 90 - 8399593 -----AGUCCACCCGAGCACUUUCUGCGCGGGCGUUCAUUAACAGCAACCUGUUAAGCCAUC--GUCGUCGGGGCGACAAACGUUGCCUUUUAUGGC--------------------- -----.(..(.((((.(((.....))).)))).)..).(((((((....)))))))((((((--(....))(((((((....)))))))...)))))--------------------- ( -32.00, z-score = -2.20, R) >consensus ______GGCCUCUGAUUCUGCUUCUGCGCGGGCGUUCAUUAACAGCAACCUGUUGAGUGUU___CCGGCCGGGGCGACAAACGUUGCCUUUUCGGGCAGU___CGAGUGGUGGUGCU_ .......................((((...(((.....(((((((....))))))).((......)))))((((((((....)))))))).....))))................... (-21.05 = -20.75 + -0.30)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 21:42:39 2011