| Sequence ID | dm3.chr2L |
|---|---|
| Location | 15,383,915 – 15,383,966 |
| Length | 51 |
| Max. P | 0.776150 |
| Location | 15,383,915 – 15,383,966 |
|---|---|
| Length | 51 |
| Sequences | 6 |
| Columns | 58 |
| Reading direction | forward |
| Mean pairwise identity | 89.50 |
| Shannon entropy | 0.18969 |
| G+C content | 0.48553 |
| Mean single sequence MFE | -19.60 |
| Consensus MFE | -11.14 |
| Energy contribution | -12.20 |
| Covariance contribution | 1.06 |
| Combinations/Pair | 1.06 |
| Mean z-score | -2.83 |
| Structure conservation index | 0.57 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.65 |
| SVM RNA-class probability | 0.776150 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr2L 15383915 51 + 23011544 UGGCGG-GCAGGAGCUUAAUAAUAGUAAUAGCU-----GUUGAUGUCUGCCUGCUGG- .(((((-(((((...((((((.((....))..)-----)))))..))))))))))..- ( -21.00, z-score = -3.44, R) >droSim1.chr2L 15142563 52 + 22036055 UGGCGG-GCAGGAGCUUAAUAAUAGUAAUAGCU-----GUUGAUGUCUGCCUGCUGAG .(((((-(((((...((((((.((....))..)-----)))))..))))))))))... ( -21.00, z-score = -3.48, R) >droSec1.super_3 1644069 51 + 7220098 UGGCGG-GCAGGAGCUUAAUAAUAGUAAUAGCU-----GUUGAUGUCUGCCUGCUGG- .(((((-(((((...((((((.((....))..)-----)))))..))))))))))..- ( -21.00, z-score = -3.44, R) >droYak2.chr2L 2382536 51 - 22324452 UGGCGG-GCAGUAGCUUAAUAAUAGUAAUAGCU-----GUUGAUGUCUGCCUGCUGG- .(((((-((((..((....(((((((....)))-----))))..)))))))))))..- ( -20.30, z-score = -3.14, R) >droEre2.scaffold_4929 7133277 51 + 26641161 UGGCGG-GCAGGAGCUUAAUAAUAGUAAUAGCU-----GUUGAUGUCUGCCUGCUGG- .(((((-(((((...((((((.((....))..)-----)))))..))))))))))..- ( -21.00, z-score = -3.44, R) >droAna3.scaffold_12916 7690287 57 + 16180835 UGGAGAAGGAGAGGCCUAAUAAUAGUAAUAGCCAAGUGGCUGAUGUCUGCCUGCUGG- ...((.(((..(((((((....)))...(((((....)))))..)))).))).))..- ( -13.30, z-score = -0.03, R) >consensus UGGCGG_GCAGGAGCUUAAUAAUAGUAAUAGCU_____GUUGAUGUCUGCCUGCUGG_ .(((((.(((((...(((((...(((....))).....)))))..))))))))))... (-11.14 = -12.20 + 1.06)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 21:42:38 2011