| Sequence ID | dm3.chr2L |
|---|---|
| Location | 15,378,754 – 15,378,808 |
| Length | 54 |
| Max. P | 0.923389 |
| Location | 15,378,754 – 15,378,808 |
|---|---|
| Length | 54 |
| Sequences | 5 |
| Columns | 54 |
| Reading direction | reverse |
| Mean pairwise identity | 88.87 |
| Shannon entropy | 0.18810 |
| G+C content | 0.38050 |
| Mean single sequence MFE | -10.90 |
| Consensus MFE | -9.82 |
| Energy contribution | -9.78 |
| Covariance contribution | -0.04 |
| Combinations/Pair | 1.10 |
| Mean z-score | -1.80 |
| Structure conservation index | 0.90 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 1.30 |
| SVM RNA-class probability | 0.923389 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr2L 15378754 54 - 23011544 CAAUGGAGUACGGUAAGCGCUGAUUCAUUGAUUCGGAAAGGAAAAAAACUAAAA (((((((...((((....)))).))))))).(((......)))........... ( -8.60, z-score = -1.32, R) >droSim1.chr2L 15137351 54 - 22036055 CAAUGGAGUGCGGUAACCGCUGAUUCAUUGAUUCAGCACGGAAAAAAACUAAAA (((((((..((((...))))...)))))))........................ ( -12.30, z-score = -1.93, R) >droSec1.super_3 1638873 54 - 7220098 CAAUGGAGUGCGGUAAGCGCUGAUUCAUUGAUUCAGAAAGGAAAACAACUAAAA (((((((((((.....)))))...))))))........................ ( -10.60, z-score = -1.56, R) >droYak2.chr2L 2377308 53 + 22324452 CAAUGGAGUGUGGUAACCGCUGAUUCAUUGAUCCA-CAAAGAAAAAAUCUAAAA (((((((..((((...))))...))))))).....-.................. ( -10.40, z-score = -1.79, R) >droEre2.scaffold_4929 7128171 53 - 26641161 CAAUGGAGUGUGGUAACCGCUGAUUCAUUGAUCCA-CAAAGGAAAAAACUAAAA (((((((..((((...))))...))))))).(((.-....)))........... ( -12.60, z-score = -2.39, R) >consensus CAAUGGAGUGCGGUAACCGCUGAUUCAUUGAUUCAGCAAGGAAAAAAACUAAAA (((((((..(((.....)))...)))))))........................ ( -9.82 = -9.78 + -0.04)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 21:42:37 2011