Locus 1983

Sequence ID dm3.chr2L
Location 15,376,896 – 15,376,988
Length 92
Max. P 0.507820
window2730

overview

Window 0

Location 15,376,896 – 15,376,988
Length 92
Sequences 5
Columns 92
Reading direction reverse
Mean pairwise identity 98.48
Shannon entropy 0.02625
G+C content 0.46087
Mean single sequence MFE -22.94
Consensus MFE -21.34
Energy contribution -21.94
Covariance contribution 0.60
Combinations/Pair 1.00
Mean z-score -1.32
Structure conservation index 0.93
Background model dinucleotide
Decision model sequence based alignment quality
SVM decision value 0.03
SVM RNA-class probability 0.507820
Prediction RNA

Download alignment: ClustalW | MAF

>dm3.chr2L 15376896 92 - 23011544
UCUACAUAAAUCUGUAGCCGAAUUACGAAUUACGACUGCGCUUUUGGCCUGCUCCCCAUACAAAUGUGGGAUGUUGGAUGCACAGCAUCCGA
...((((......(((((((((...((...........))..))))).))))..((((((....))))))))))(((((((...))))))). ( -24.80, z-score =  -1.66, R)
>droSim1.chr2L 15135491 92 - 22036055
UCUACAUAAAUCUGUAGCCGAAUUACGAAUUACGACUGCGCUUUUGGCCUGCUCCCCAUACAAAUGUGGGAUGUUGGAUGCACAGCAUCCGA
...((((......(((((((((...((...........))..))))).))))..((((((....))))))))))(((((((...))))))). ( -24.80, z-score =  -1.66, R)
>droSec1.super_3 1637025 92 - 7220098
UCUACAUAAAUCUGUAGCCGAAUUACGAAUUACGACUGCGCUUUUGGCCUGCUCCCCAUACAAAUGUGGGAUGUUGGAUGCACAGCAUCCGA
...((((......(((((((((...((...........))..))))).))))..((((((....))))))))))(((((((...))))))). ( -24.80, z-score =  -1.66, R)
>droYak2.chr2L 2374726 92 + 22324452
UCUACAUAAAUCUGUAACCGAAUUACGAAUUACGACUGCGCUUUUGGCCUGCUCCCCAUACAAAUGUGGGAUGUUGGAUGCUCAGCAUCCGA
...((((......(((.(((((...((...........))..)))))..)))..((((((....))))))))))(((((((...))))))). ( -20.60, z-score =  -0.82, R)
>droEre2.scaffold_4929 7126283 92 - 26641161
UCUACAUAAAUCUGUAACCGAAUUACGAAUUACGACUGCACUUUUGGCCUGCUCCCCAUACAAAUGUGGGAUGUUGGAUGCACAGCAUCCGA
......((((..((((..(((((.....))).))..))))..))))....((..((((((....))))))..))(((((((...))))))). ( -19.70, z-score =  -0.79, R)
>consensus
UCUACAUAAAUCUGUAGCCGAAUUACGAAUUACGACUGCGCUUUUGGCCUGCUCCCCAUACAAAUGUGGGAUGUUGGAUGCACAGCAUCCGA
...((((......(((((((((...((...........))..))))).))))..((((((....))))))))))(((((((...))))))). (-21.34 = -21.94 +   0.60)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 21:42:34 2011