| Sequence ID | dm3.chr2L |
|---|---|
| Location | 15,372,211 – 15,372,321 |
| Length | 110 |
| Max. P | 0.592317 |
| Location | 15,372,211 – 15,372,321 |
|---|---|
| Length | 110 |
| Sequences | 7 |
| Columns | 110 |
| Reading direction | reverse |
| Mean pairwise identity | 70.65 |
| Shannon entropy | 0.62034 |
| G+C content | 0.53031 |
| Mean single sequence MFE | -29.96 |
| Consensus MFE | -13.05 |
| Energy contribution | -14.21 |
| Covariance contribution | 1.16 |
| Combinations/Pair | 1.35 |
| Mean z-score | -1.07 |
| Structure conservation index | 0.44 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.20 |
| SVM RNA-class probability | 0.592317 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr2L 15372211 110 - 23011544 UGUUAACAGUAAAAACCCCGUAGAAACGCCCUUGGUCCGCCAUUUGAUUCUUGGGCAGAAAGUGCCACCUUAAAUUGGCCUUUUAUCUGUCCGCACCCUUCGCCGGCGGU ..............((((((..(((..((...(((....)))..........((((((((((.((((........)))))))...)))))))))....)))..))).))) ( -29.40, z-score = -0.77, R) >droSim1.chr2L 15130811 110 - 22036055 UUUUGACAGUAAAAACGCCGUAGAAACGCCCCUGGUUCGCCAUCUGGUUCUUGGGCAGAAAGUGCCACCUUAAAUUGGCCUUUUAUCUGUCCGCACCCUUCGCCGGCGGU ...............(((((..(((..(((..(((....)))...)))....((((((((((.((((........)))))))...)))))))......)))..))))).. ( -34.20, z-score = -1.24, R) >droSec1.super_3 1632398 110 - 7220098 UUCUGACAGUAAAAACGCCGUAGAAACGCCCCUGGUUCGCCAUCUGGUUCUUGGGCAGAAAGUGCCACCUUAAAUUGGCCUUUUAUCUGUCCGCACCCUUCGCCGGCGGU ...............(((((..(((..(((..(((....)))...)))....((((((((((.((((........)))))))...)))))))......)))..))))).. ( -34.20, z-score = -1.27, R) >droYak2.chr2L 2370016 85 + 22324452 UUUUGACAGUCAGAGCCCCGUAGACACCCC-------------------------CAGAAAGUGCCACCUUAAAUUGGCCUUUUAUCUGUCCGCACCCCUCGAUGGCGGU (((((.....)))))....(..((((....-------------------------..(((((.((((........)))))))))...))))..)(((((.....)).))) ( -19.00, z-score = -0.80, R) >droEre2.scaffold_4929 7121836 110 - 26641161 UUUUGACAGUGAAAACCCCGUAGAAACUCCCUUGGUCCGCCAACUGAUUCUUGGGCAGAAAGUGCCACCUUAAAUUGGCCUUUUAUCUGUCCGCACCCCUCGCUGGCGCU ......((((((.........((((..((..((((....))))..)))))).((((((((((.((((........)))))))...))))))).......))))))..... ( -30.30, z-score = -1.65, R) >droAna3.scaffold_12916 7678785 107 - 16180835 UUUUGACAGAGGCCUGUGUGCCCAGUGUCUGGCCCAUCCGGAUUUACUUUUUGGGCAGAAAGUGCCACCUUAAAUUGGCCUUUUAUCUGUCCGCACCCUUCGACGGC--- ....(((((((((((.(.(((((((.((((((.....)))))).......))))))).).)).))).((.......)).......))))))................--- ( -32.20, z-score = -0.92, R) >dp4.chr4_group4 4160130 97 + 6586962 UUUUGACAG-GCCCAG---GCCCAGGCCCAGGCCUUGCCCUGCUCUUUCUGGUGCCAGCAAAUGCCACAUUUAAUUGGCCUUUUAUCUGUCUGCACCCCUG--------- ......(((-(..(((---(.(.((((....)))).).))))........((((((((.(((.((((........)))).)))...)))...)))))))))--------- ( -30.40, z-score = -0.85, R) >consensus UUUUGACAGUAAAAACCCCGUAGAAACGCCCCUGGUUCGCCAUCUGAUUCUUGGGCAGAAAGUGCCACCUUAAAUUGGCCUUUUAUCUGUCCGCACCCUUCGCCGGCGGU .................(((..(((.......(((....)))..........((((((((((.((((........)))))))...)))))))......)))..))).... (-13.05 = -14.21 + 1.16)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 21:42:33 2011