| Sequence ID | dm3.chr2L |
|---|---|
| Location | 15,358,839 – 15,358,926 |
| Length | 87 |
| Max. P | 0.629082 |
| Location | 15,358,839 – 15,358,926 |
|---|---|
| Length | 87 |
| Sequences | 6 |
| Columns | 89 |
| Reading direction | forward |
| Mean pairwise identity | 76.69 |
| Shannon entropy | 0.44740 |
| G+C content | 0.50077 |
| Mean single sequence MFE | -20.51 |
| Consensus MFE | -11.32 |
| Energy contribution | -12.36 |
| Covariance contribution | 1.04 |
| Combinations/Pair | 1.19 |
| Mean z-score | -1.46 |
| Structure conservation index | 0.55 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.29 |
| SVM RNA-class probability | 0.629082 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr2L 15358839 87 + 23011544 UUCCCCCUGCACUAAUUGGUGAGACAAAGAAACGGUUCUUGCAUUGGUUUCUCUC--GCGGGAAUCUCUCUCUCUGUUCCUCAAACUCC ...............((((.(..(((.(((...(((((((((.............--)))))))))....))).)))..)))))..... ( -16.42, z-score = 0.14, R) >droSim1.chr2L 15116837 87 + 22036055 UUCCCCCUGCACUAAUUGGUGAGACAAAGAAACGGUUCUUGCAUUCGUUUCUCUC--GCGGGAAUCUCUCUCUCUGUUCCUCAAACUCC .....((((((((....)))((((....(((((((.........)))))))))))--)))))........................... ( -18.20, z-score = -1.05, R) >droSec1.super_3 1619034 87 + 7220098 UUCCCUCUGCACUAAUUGGUGAGACAAAGAAACGGUUCUUGCAUUCGUUUCUCUC--GCGGGAAUCUCUCUCUCUGUUCCUCAAACUCU (((((......(.....)((((((....(((((((.........)))))))))))--)))))))......................... ( -18.50, z-score = -1.39, R) >droYak2.chr2L 2354580 85 - 22324452 UUUCCCCUGCACUAAUUGGCGAGACUAAGAAACGGUUCUUGCAUUUGCUUCUCUC--GCGGGAAUCUCUCUCU--GUUUCCCAAACUCC ...............((((.(((((..(((...(((((((((.............--)))))))))..)))..--)))))))))..... ( -22.02, z-score = -2.54, R) >droEre2.scaffold_4929 7108156 85 + 26641161 CUUGCCCUGCACUAAUUGGUGGGACGGAGAAACCGUUCUUGCAUUGGUUUCUCUG--GCGGGAAUCUCUCUCU--GUUGCCCAAACUCC ...((((..(.(.....))..)).(((((((((((.........)))))))))))--))(((...(.......--)...)))....... ( -26.40, z-score = -1.67, R) >droPer1.super_10 1982376 74 - 3432795 UUUCCCUCGGACAAAU----GCAACAGUGACUCUGUCUCUGUCUCUGUCGCUCUGUGGCGGGCAUCCCGCUCUCUGUC----------- .......((((((...----((.((((.(((.........))).)))).))....))(((((...)))))..))))..----------- ( -21.50, z-score = -2.27, R) >consensus UUCCCCCUGCACUAAUUGGUGAGACAAAGAAACGGUUCUUGCAUUCGUUUCUCUC__GCGGGAAUCUCUCUCUCUGUUCCUCAAACUCC ...............((((.(.((((.(((...(((((((((...............)))))))))....))).)))).)))))..... (-11.32 = -12.36 + 1.04)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 21:42:29 2011