| Sequence ID | dm3.chr2L |
|---|---|
| Location | 15,350,610 – 15,350,712 |
| Length | 102 |
| Max. P | 0.750633 |
| Location | 15,350,610 – 15,350,712 |
|---|---|
| Length | 102 |
| Sequences | 4 |
| Columns | 102 |
| Reading direction | reverse |
| Mean pairwise identity | 76.77 |
| Shannon entropy | 0.36782 |
| G+C content | 0.52999 |
| Mean single sequence MFE | -29.88 |
| Consensus MFE | -22.30 |
| Energy contribution | -23.43 |
| Covariance contribution | 1.13 |
| Combinations/Pair | 1.08 |
| Mean z-score | -1.31 |
| Structure conservation index | 0.75 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.58 |
| SVM RNA-class probability | 0.750633 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr2L 15350610 102 - 23011544 CACGCGAUAGUUAUCCUAAUGGGUUGACUUUCGUUUGGAACUUCACUAUACCGCUCAGCCGUCGCCUGGGCCUUUGGCUUGGGUCUUGGCUUUGGGUCUUGG ((.((((.((((((((....))).))))).)))).))........(((.(((.(..(((((..(((..((((...))))..)))..)))))..))))..))) ( -38.40, z-score = -3.12, R) >droSim1.chr2L 15108679 96 - 22036055 CACGCGAUAGUUAUCCUAAUGGGUUGACUUUCGUUUGGAACUUCGCUAUACCGCUCAGCCGUCGCCUGGGUCUUUGGCUUGGGUUUUGGGUCUUGG------ ...((((.(((..(((.((((((......)))))).))))))))))....(((...(.(((..(((..(((.....)))..)))..))).)..)))------ ( -28.80, z-score = -0.86, R) >droSec1.super_3 1610968 96 - 7220098 CACGCGAUAGUUAUCCUAAUGGGUUGACUUUCGUUUGGAACUUCGCUAUCCCGCUCAGCCGUCGCCGGGGCCUUUAGCUUGGGUUUUGGGUUUUGG------ ...((((.((((((((....))).))))).))))(..((((...((......))....(((..(((.((((.....)))).)))..)))))))..)------ ( -28.30, z-score = -0.05, R) >dp4.chr4_group4 4137550 78 + 6586962 CACGCGAUAGUUAUCCUAAUGGGUUGACUUUCGUUUGAAAUUCUGCUGCCCGG----------GCCUGGGCC-UCAGCCUCAGUCUCAG------------- ((.((((.((((((((....))).))))).)))).)).....(((..((..((----------((....)))-)..))..)))......------------- ( -24.00, z-score = -1.23, R) >consensus CACGCGAUAGUUAUCCUAAUGGGUUGACUUUCGUUUGGAACUUCGCUAUACCGCUCAGCCGUCGCCUGGGCCUUUAGCUUGGGUCUUGGGUUUUGG______ ((.((((.((((((((....))).))))).)))).)).....................(((..((((((((.....))))))))..)))............. (-22.30 = -23.43 + 1.13)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 21:42:28 2011