| Sequence ID | dm3.chr2L |
|---|---|
| Location | 15,347,054 – 15,347,149 |
| Length | 95 |
| Max. P | 0.705462 |
| Location | 15,347,054 – 15,347,149 |
|---|---|
| Length | 95 |
| Sequences | 11 |
| Columns | 102 |
| Reading direction | forward |
| Mean pairwise identity | 71.90 |
| Shannon entropy | 0.53577 |
| G+C content | 0.46828 |
| Mean single sequence MFE | -23.83 |
| Consensus MFE | -11.68 |
| Energy contribution | -11.57 |
| Covariance contribution | -0.11 |
| Combinations/Pair | 1.08 |
| Mean z-score | -1.35 |
| Structure conservation index | 0.49 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.46 |
| SVM RNA-class probability | 0.705462 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr2L 15347054 95 + 23011544 ----CGCGACUCCGAUUGAUGGACUUUAAGUCAAAGUCAAGUUGGAGUUCAAGUUCUGGACCGCGACCAAGACGAAGACGAAGCUGUAGUUGGAGCUGG--- ----..((.((((((((.((((.((((..(((...(((..((((..(((((.....)))))..))))...)))...))))))))))))))))))).)).--- ( -27.60, z-score = -0.67, R) >dp4.chr4_group4 4133540 90 - 6586962 CAGCGGAGCCUCCAAUUGAUGGACUUUAAGUCAAAGUCAAGUUGGAGUUCAAGUCCCAGUCCAAGACGAAAACGAAGACGAAGCCACAUC------------ ..((.((((.((((((((((.(((.....)))...))).)))))))))))..(((...((...........))...)))...))......------------ ( -20.90, z-score = -1.26, R) >droPer1.super_10 1970013 84 - 3432795 CAGCGGAGCCUCCAAUUGAUGGACUUUAAGUCAAAGUCAAGUUGGAGUUCAAGUCCCAGUCCAAGUCGAA------GACGAAGCCACAUC------------ ..((.((((.((((((((((.(((.....)))...))).)))))))))))..(((....((......)).------)))...))......------------ ( -21.00, z-score = -1.81, R) >droAna3.scaffold_12916 7652717 83 + 16180835 ----AGCGACUCCGAUUGAUGGACUUUAAGUCAAAGUCAAGUUGGAGUUCAAGUUCUGGUCCGAGACGGUAUUGGAGUCAAAGCCAU--------------- ----.(((((((((((((((.(((.....)))...))).))))))))))...((((..(((((...))).))..))).)...))...--------------- ( -26.30, z-score = -2.30, R) >droEre2.scaffold_4929 7094840 98 + 26641161 ----CGCGACUCCGAUUGAUGGACUUUAAGUCAAAGUCAAGUUGGAGUUCAAGUUCUGGACCGCGACCAAGAUGAAGAUGAAGACGAAGACGAAGCUGUAGU ----.(((((((((((((((.(((.....)))...))).))))))))))...((..(((.......)))..)).....................))...... ( -22.40, z-score = 0.07, R) >droYak2.chr2L 2342240 86 - 22324452 ----CGCGACUCCGAUUGAUGGACUUUAAGUCAAAGUCAAGUUGCAGUUCAAGUUCUGGACCGCGACGAAGAUGAAGACGAAGCUGUAGU------------ ----.(((.((.((.(((((.(((.....)))...)))))(((((.(((((.....))))).)))))...........)).)).)))...------------ ( -22.40, z-score = -0.48, R) >droSec1.super_3 1607456 86 + 7220098 ----CGCGACUCCGAUUGAUGGACUUUAAGUCAAAGUCAAGUUGGAGUUCAAGUUCUGGACCGCGACCAAGACGAAGACGAAGCUGUAGU------------ ----.(((((((((((((((.(((.....)))...))).))))))))))...((..(((.......)))..)).........))......------------ ( -24.60, z-score = -1.15, R) >droSim1.chr2L 15105151 95 + 22036055 ----CGCGACUCCGAUUGAUGGACUUUAAGUCAAAGUCAAGUUGGAGUUCAAGUUCUGGACCGCGACCAAGACGAAGACGAAGCUGUAGUUGGAGUUGG--- ----..(((((((((((.((((.((((..(((...(((..((((..(((((.....)))))..))))...)))...)))))))))))))))))))))).--- ( -32.20, z-score = -2.36, R) >droGri2.scaffold_15126 5546701 81 + 8399593 ----UCCACUUCCACUUGAUGGACUUUA-GUCAAAGUCAAGUUGGAGUUCAAGUUCUGGCC---GACAGUUUUCUGCAUAAUGCCAAGU------------- ----...(((((.(((((((.(((....-)))...))))))).)))))........((((.---..(((....)))......))))...------------- ( -21.90, z-score = -1.73, R) >droMoj3.scaffold_6500 20723574 79 + 32352404 ----UCCACUUCCACUUGAUGGACUUUA-GUCAAAGUCAAGUUGGAGUUCAAGUUCUGGCC---GACAGUUU-CUGCAUAAUGC-AAGU------------- ----...(((((.(((((((.(((....-)))...))))))).)))))...((..(((...---..)))...-))((.....))-....------------- ( -20.50, z-score = -1.30, R) >droVir3.scaffold_12963 12010391 79 + 20206255 ----UCCACUUCCACUUGAUGGACUUUA-GUCAAAGUCAAGUUGGAGUUCAAGUUCUGGCC---GACAGAUU-CUGCAUAAUGC-AAGU------------- ----...(((((.(((((((.(((....-)))...))))))).)))))......((((...---..))))..-.(((.....))-)...------------- ( -22.30, z-score = -1.83, R) >consensus ____CGCGACUCCGAUUGAUGGACUUUAAGUCAAAGUCAAGUUGGAGUUCAAGUUCUGGACCGCGACCAAGACGAAGACGAAGCCAUAG_____________ .........((((..(((((.(((.....)))...)))))...))))....................................................... (-11.68 = -11.57 + -0.11)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 21:42:27 2011