| Sequence ID | dm3.chr2L |
|---|---|
| Location | 15,344,847 – 15,344,969 |
| Length | 122 |
| Max. P | 0.956215 |
| Location | 15,344,847 – 15,344,969 |
|---|---|
| Length | 122 |
| Sequences | 11 |
| Columns | 139 |
| Reading direction | forward |
| Mean pairwise identity | 71.13 |
| Shannon entropy | 0.57131 |
| G+C content | 0.37563 |
| Mean single sequence MFE | -35.58 |
| Consensus MFE | -9.97 |
| Energy contribution | -9.98 |
| Covariance contribution | 0.01 |
| Combinations/Pair | 1.28 |
| Mean z-score | -2.94 |
| Structure conservation index | 0.28 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 1.63 |
| SVM RNA-class probability | 0.956215 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr2L 15344847 122 + 23011544 CGAUUUUCACUCCUUA-AAACUUUUAAGGAAAUGGAUAU----GCCGGCGAAAUGUCCAUUUUUGUGU---UUC----UUUG---CAGCGUUAUUUCCUUAAAAGAUAUUUUG-CCAU-UGGCGCAUGGAGAAUUGUAA ((((((((........-...(((((((((((((((...(----((..(.((((..(........)..)---)))----)..)---))...))))))))))))))).......(-((..-.))).....))))))))... ( -33.20, z-score = -2.61, R) >dp4.chr4_group4 4131484 124 - 6586962 CGGUUUUCACUCUUUU-GAGCAUUUAAGGAAAUGGAAAU----GUCUGCAAAAUGUCCAUUUUGGUAU---UUU----UUCG---CAGCGCUAUUUCCUUAAAAGAUUCGCCAACGGCGCGGCGAAUGGAGAAUUGUAA ((((((((.(((....-)))..(((((((((((((....----(.((((((((((.((.....)))))---)))----...)---)))).)))))))))))))..(((((((........))))))).))))))))... ( -40.30, z-score = -3.18, R) >droPer1.super_10 1967949 124 - 3432795 CGGUUUUCACUCUUUU-GAGCAUUUAAGGAAAUGGAAAU----GUCUGCAAAAUGUCCAUUUUGGUAU---UUU----UUCG---CAGCGCUAUUUCCUUAAAAGAUUCGCCAACGGCGCGGCGAAUGGAGAAUUGUAA ((((((((.(((....-)))..(((((((((((((....----(.((((((((((.((.....)))))---)))----...)---)))).)))))))))))))..(((((((........))))))).))))))))... ( -40.30, z-score = -3.18, R) >droAna3.scaffold_12916 7650513 132 + 16180835 UGAUUUUCACUUUUUUUAAGCUUUUAAGGAAAUGGAAAU--UGGUGGAAAAGCCACCCAUUUUGGUGUCUGUUUCUCUUUCGUUUCCGAGAUAUUUCCUUAAAAGAUUUUGUGGCCAU-UGG----AGGAGAAUCGUAA .(((((((.((((.......(((((((((((((((((((--.((.((((.((.((((......)))).)).)))).))...)))))).....))))))))))))).............-.))----))))))))).... ( -36.40, z-score = -1.96, R) >droEre2.scaffold_4929 7092548 126 + 26641161 CGAUUUUCACUCCUUA-AAACAUUUAAGGAAAUGGAUGU----GCUGGCGAAAUGUCCAUUUUGGUGU---UUUGGUGUUUG---CAGCGAUAUUUCCUUAAAAGAUAUUUUG-CCAU-UGCUGCAUGGAGAAUUGUAA ((((((((..((((((-(.....))))))).....((((----((((((((((((((..((..((.((---.(((.((....---)).))).))..))..))..)))))))))-))).-.)).)))).))))))))... ( -38.20, z-score = -3.32, R) >droYak2.chr2L 2340047 126 - 22324452 CCAUUUUCACUCCUUA-AAACCUUUAAGGAAAUGGAUAGAUAGGCUGGCCAAAUGUCCAUUUUGGUGC---UUC----UUUG---CAGCGAUAUUUCCUUAAAAGAUAUUUUG-CCAU-UGGUGCAUGGAGAAUUGUAA .........((((...-..(((((((((((((((((((....((....))...)))))...(((.(((---...----...)---)).))).))))))))))).(((......-..))-))))....))))........ ( -31.90, z-score = -1.09, R) >droSec1.super_3 1605241 122 + 7220098 CGAUUUUCACUCCUUA-AAACUUUUAAGGAAAUGGAUAU----GCCGGCGAAAUGUCCAUUUUGGUGU---UUC----UUUG---CAGCGUUAUUUCCUUAAAAGAUAUUUUG-CCAU-UACCGCAUGGAGAAUUGUAA ((((((((........-...(((((((((((((((...(----((..(.((((((.((.....)))))---)))----)..)---))...)))))))))))))))......((-(...-....)))..))))))))... ( -34.10, z-score = -3.19, R) >droSim1.chr2L 15102890 122 + 22036055 CGAUUUUCACUCCUUA-AAACUUUUAAGGAAAUGGAUAU----GCCGGCGAAAUGUCCAUUUUGGUGU---UUC----UUUG---CAGCGUUAUUUCCUUAAAAGAUAUUUUG-CCAU-UGCCGCAUGGAGAAUUGUAA ((((((((........-...(((((((((((((((...(----((..(.((((((.((.....)))))---)))----)..)---))...)))))))))))))))......((-(...-....)))..))))))))... ( -34.10, z-score = -2.82, R) >droVir3.scaffold_12963 12007482 108 + 20206255 CAAAUUUCACUUGGUG--CGCAUUUAAGGAAAUGUCGGG-----------AAAUGUCCAUUUUGGUUACGGUU--------------GCGAUAUUUCCUUAAAAGAUUUUU----CAACGCCAGCAAAUGGAAUUGUGG ..(((((((.(((.((--.((.(((((((((((((((.(-----------(.....((.....))......))--------------.))))))))))))))).((....)----)...)))).))).))))))).... ( -35.10, z-score = -3.69, R) >droMoj3.scaffold_6500 20720515 109 + 32352404 CAAAUUUCACUUGGUG--CGCAUUUAAGGAAAUGUCGAG-----------AAAUGUCCAUUUUGGUUACGGUUA-------------GCGAUAUUUCCUUAAAAGAUUUUU----CAACGCCAGCAAAUGGAAUUGUGG ..(((((((.(((.((--.((.(((((((((((((((..-----------((.(((((.....))..))).)).-------------.))))))))))))))).((....)----)...)))).))).))))))).... ( -34.60, z-score = -3.98, R) >droGri2.scaffold_15126 5543938 109 + 8399593 CAAAUUUCACUUGGUG--CGCAUUUAAGGAAAUGUCGAG-----------AAAUGUCCAUUUUGGUUACGGUU--------------GCGAUAUUUCCUUAAAAGAUUUUUU---CAACGGCGUCAAAUGGAAUUGUGG ..(((((((.(((..(--(...(((((((((((((((..-----------...(((((.....))..)))...--------------.))))))))))))))).((.....)---)....))..))).))))))).... ( -33.20, z-score = -3.39, R) >consensus CGAUUUUCACUCCUUA_AAGCAUUUAAGGAAAUGGAUAU____GCCGGCGAAAUGUCCAUUUUGGUGU___UUC____UUUG___CAGCGAUAUUUCCUUAAAAGAUUUUUUG_CCAU_UGCCGCAUGGAGAAUUGUAA ......................(((((((((((((..............(((....((.....))......)))................))))))))))))).................................... ( -9.97 = -9.98 + 0.01)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 21:42:27 2011