| Sequence ID | dm3.chr2L |
|---|---|
| Location | 15,296,480 – 15,296,581 |
| Length | 101 |
| Max. P | 0.942037 |
| Location | 15,296,480 – 15,296,581 |
|---|---|
| Length | 101 |
| Sequences | 5 |
| Columns | 109 |
| Reading direction | reverse |
| Mean pairwise identity | 88.77 |
| Shannon entropy | 0.19464 |
| G+C content | 0.59266 |
| Mean single sequence MFE | -45.97 |
| Consensus MFE | -30.68 |
| Energy contribution | -31.76 |
| Covariance contribution | 1.08 |
| Combinations/Pair | 1.13 |
| Mean z-score | -2.88 |
| Structure conservation index | 0.67 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 1.48 |
| SVM RNA-class probability | 0.942037 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr2L 15296480 101 - 23011544 GCACUUGGC--CUGGUCCACAGAUGGGUCAGGCCAAUUGCGAAGCCAUUAAAUCGCCAU------GGCCAGGGCCACAGUCGAGGCAAGUGGAGUCUCUAGGCCACGGA (((.(((((--(((..(((....)))..)))))))).)))...............((.(------((((((((((((.((....))..))))...)))).))))).)). ( -46.90, z-score = -3.34, R) >droSim1.chr2L 15053072 101 - 22036055 GCACUUGGC--CUGGUCCACAGAUGGGUCAGGCCAAUUGCGAAGCCAUUAAAUCGCCAU------GGCCAGGGCCACAGCCGAGGCAAGUGGAGUCUCUAGGCCACGGA (((.(((((--(((..(((....)))..)))))))).)))...............((.(------((((((((((((.((....))..))))...)))).))))).)). ( -49.00, z-score = -3.58, R) >droSec1.super_3 1557918 101 - 7220098 GCACUUGGC--CUGGUCCACAGAUGGGUCAGGCCAAUUGCGAAGCCAUUAAAUCGCCAU------GGCCAGGGCCACAGCCGAGGCAAGUGGAGUCUCUAGGCCAGGGA (((.(((((--(((..(((....)))..)))))))).)))...............((.(------((((((((((((.((....))..))))...)))).))))).)). ( -49.00, z-score = -3.32, R) >droYak2.chr2L 2291621 109 + 22324452 GCACUUGGCACUUGGCCCAGAGUUGGGUCAGGCCAAUUGCGAAGGCAUUAUAUCGCCAUGACCACGGCCAGGGCCACAGACAAGGUAAGUGGAGUCUCUAGGCCACGGA (((.(((((.((.(((((......)))))))))))).)))...(((........)))....((..((((((((((((..((...))..))))...)))).))))..)). ( -43.40, z-score = -2.09, R) >droEre2.scaffold_4929 7044605 96 - 26641161 GCACUUGGC-------CCACAGAUGGGUCAGGGCAAUUGCGAGGCCAUUAUAUCGCCAU------UGCCAGGGCCACAGCCAUGGCAAGUGGAGUCUCUAGGCCACUGA ((.((((((-------(((....)))))))))))........((((.........((((------(((((.(((....))).)))).)))))........))))..... ( -41.53, z-score = -2.10, R) >consensus GCACUUGGC__CUGGUCCACAGAUGGGUCAGGCCAAUUGCGAAGCCAUUAAAUCGCCAU______GGCCAGGGCCACAGCCGAGGCAAGUGGAGUCUCUAGGCCACGGA (((.(((((..((((((((....))))))))))))).))).........................((((((((((((.((....))..))))...)))).))))..... (-30.68 = -31.76 + 1.08)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 21:42:23 2011