Locus 1972

Sequence ID dm3.chr2L
Location 15,272,005 – 15,272,119
Length 114
Max. P 0.913273
window2715

overview

Window 5

Location 15,272,005 – 15,272,119
Length 114
Sequences 3
Columns 119
Reading direction forward
Mean pairwise identity 73.86
Shannon entropy 0.36892
G+C content 0.39631
Mean single sequence MFE -31.13
Consensus MFE -18.52
Energy contribution -20.42
Covariance contribution 1.90
Combinations/Pair 1.25
Mean z-score -2.19
Structure conservation index 0.59
Background model dinucleotide
Decision model sequence based alignment quality
SVM decision value 1.23
SVM RNA-class probability 0.913273
Prediction RNA

Download alignment: ClustalW | MAF

>dm3.chr2L 15272005 114 + 23011544
GGCGACAAAAGUAGCAUUGUUGUUGUUUUUCGAGGCGAAUGGUGAUAGCUAUCGAUAGU-----ACUUUUCCAUCGAUAGUGUCAAAACCAGUUGCUCUCAACUUUAUGAUAAAUAAAA
((((((((........)))))))).......(((((((.((((....(((((((((.(.-----......).)))))))))......)))).)))).)))...(((((.....))))). ( -31.30, z-score =  -2.79, R)
>droEre2.scaffold_4929 7016934 106 + 26641161
GGCGAUAGAAGU-GCCGUGUUGUUGUUUUUCGCGGCGAAUGGUGAUAACUAUCGAGGGU-----ACU-------CGAUAGUUCCAUUACCAGUUGCUCUCAGCUUUAUAACAUCUAAAA
((((((.....(-((((((..(.....)..)))))))..(((((((((((((((((...-----.))-------))))))))..)))))))))))))...................... ( -36.70, z-score =  -3.68, R)
>droYak2.chr2L 2265610 119 - 22324452
AGCGAUAGAAGUAGCCUUGUUGUUGUUUUUAGGGGCGAAUGGCGAUUUCGAUCGAUAGUUCGCAAUCCAUUGGUCAAUAGUUACAUUACCAGUUGUUUUCAGCUUUAUAACAUAUGCAA
..((((.(((((.((((((((.(((....))).)))))..))).))))).)))).......(((......((((.(((......)))))))((((....))))...........))).. ( -25.40, z-score =  -0.11, R)
>consensus
GGCGAUAGAAGUAGCCUUGUUGUUGUUUUUCGAGGCGAAUGGUGAUAACUAUCGAUAGU_____ACU__U___UCGAUAGUUACAUUACCAGUUGCUCUCAGCUUUAUAACAUAUAAAA
((((((.......((((((...........))))))...(((((((.(((((((((................)))))))))...)))))))))))))...................... (-18.52 = -20.42 +   1.90)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 21:42:22 2011