| Sequence ID | dm3.chr2L |
|---|---|
| Location | 15,266,224 – 15,266,299 |
| Length | 75 |
| Max. P | 0.960131 |
| Location | 15,266,224 – 15,266,299 |
|---|---|
| Length | 75 |
| Sequences | 7 |
| Columns | 90 |
| Reading direction | reverse |
| Mean pairwise identity | 60.63 |
| Shannon entropy | 0.72475 |
| G+C content | 0.45358 |
| Mean single sequence MFE | -15.91 |
| Consensus MFE | -6.81 |
| Energy contribution | -7.30 |
| Covariance contribution | 0.49 |
| Combinations/Pair | 1.25 |
| Mean z-score | -1.43 |
| Structure conservation index | 0.43 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 1.68 |
| SVM RNA-class probability | 0.960131 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr2L 15266224 75 - 23011544 --------CACACUAACU----GAAAAACACAAUCUGCAGCUCGGACGGAAUG-GCC--UGAGCAUACGAGCGGCAUUGAUAUGGCGGAU --------..........----..........((((((.((((((.(......-).)--)))))...(((......))).....)))))) ( -16.40, z-score = -0.73, R) >droSim1.chr2L 15022396 79 - 22036055 --------CACUCUAACAAAAAAAAAAAAACCAUCUGCAGCUCGGACAGAAUG-GCC--UGAGCAUACGAGCGGCAUUGAUAUGGCGGAU --------........................((((((.(((((..(((....-..)--))......)))))..(((....))))))))) ( -16.50, z-score = -0.86, R) >droSec1.super_3 1527973 77 - 7220098 --------CACUCUAACA--GAAAAAAAAACAAUCUGCAGCUCGGACAGAAUG-GCC--UGAGCAUACGAGCGGCAUUGAUAUGGCGGAU --------..(((...((--((...........))))..((((((.(......-).)--)))))....)))((.(((....))).))... ( -16.80, z-score = -0.96, R) >droYak2.chr2L 2259776 67 + 22324452 --------CACACUAA----------AAACAAAUCUGCGGCUCGGACUGCAUGCGCC--UGAGUACACGAGCGGCAUUGAUAAAGAU--- --------........----------......((((((.(((((.(((((....)).--..)))...))))).)))..)))......--- ( -16.60, z-score = -1.36, R) >droEre2.scaffold_4929 7011153 73 - 26641161 --------CACACUAAAA----AAAGAAAAAAAUCUGCUGCUCGGACAGCAUGCGCC--UGAGCACACGAGCGGCAUUGAUACAGAU--- --------..........----..........((((((((((((.......(((...--...)))..)))))))))..)))......--- ( -17.80, z-score = -1.81, R) >droAna3.scaffold_12916 7567507 76 - 16180835 -CAAAACACACAGUAA-----ACCAAACUGAAAAUCAUCGCUCGAACAGCAGGCGCC--UGACAAAUCGAGCAGCAAUUAUAAU------ -.........((((..-----.....)))).........((((((....(((....)--)).....))))))............------ ( -16.30, z-score = -3.46, R) >droGri2.scaffold_15126 5462193 82 - 8399593 CACAAUUAUUCGGUUAAA---AGAAAAAAGCCAGUUUCAAUUCAGCGCCAAUGCAACAGCAAGCAUUCAAAGUGCAAUCCUAUAU----- ...........((((...---.......))))............((((.(((((........)))))....))))..........----- ( -11.00, z-score = -0.86, R) >consensus ________CACACUAACA___AAAAAAAAACAAUCUGCAGCUCGGACAGAAUGCGCC__UGAGCAUACGAGCGGCAUUGAUAUAGCG___ ...................................(((.(((((.......................))))).))).............. ( -6.81 = -7.30 + 0.49)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 21:42:21 2011