| Sequence ID | dm3.chr2L |
|---|---|
| Location | 15,236,876 – 15,236,969 |
| Length | 93 |
| Max. P | 0.813144 |
| Location | 15,236,876 – 15,236,969 |
|---|---|
| Length | 93 |
| Sequences | 7 |
| Columns | 95 |
| Reading direction | forward |
| Mean pairwise identity | 67.29 |
| Shannon entropy | 0.59804 |
| G+C content | 0.38945 |
| Mean single sequence MFE | -22.23 |
| Consensus MFE | -5.33 |
| Energy contribution | -6.23 |
| Covariance contribution | 0.90 |
| Combinations/Pair | 1.17 |
| Mean z-score | -2.63 |
| Structure conservation index | 0.24 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.77 |
| SVM RNA-class probability | 0.813144 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr2L 15236876 93 + 23011544 GCCACCCGAUAAGGAUGGCAAAACUUUGUUACUUUGGCG-AUGG-CGACAACUUUGCCAACUAACAAACUAUUAUAUGCAAACAAUAAUUGCACU ((((.((.....)).)))).....(((((((..((((((-(((.-...))...))))))).)))))))........(((((.......))))).. ( -25.80, z-score = -4.56, R) >droPer1.super_5 2888697 79 + 6813705 ----------------GGGAAAACUUUGCUUCUUAAAUUUAUCAGAGGCAUUCCUUAAAAUGUGGCUUCCAGAAGAAGAAGAAAACGAAUAAAUU ----------------(((((.....(((((((..........)))))))))))).....(((..((((........))))...)))........ ( -13.80, z-score = -0.40, R) >dp4.chr4_group1 2971009 76 - 5278887 ----------------GGGAAAACUUUGCUUCUUAAAUUUAUCAGAGGCAUUCCUUAAAAUGUGGCUUCCUUAAGAAGAA---AACGAAUAAAUU ----------------(((((.....(((((((..........)))))))))))).....(((..((((.....))))..---.)))........ ( -13.80, z-score = -0.88, R) >droEre2.scaffold_4929 6981713 94 + 26641161 GCCACCCGAUAAGGAUGGCAAAACUUUGUUUCUUUGGCG-CUGGGCGACAACUUUGCCAACUAGCAAACUGCUAUAUGCAAGAAAUAAUUGCACU ((((.((.....)).))))......((((((((...(((-...(((((.....)))))...((((.....))))..))).))))))))....... ( -26.30, z-score = -1.99, R) >droYak2.chr2L 2230083 93 - 22324452 GCCACCCGACAAGGAUGGCAAAACUUUGUUACUUUGGCC-AUGG-GGACAACUUUGCCAACUAACAAACUAUUAUAUGCAAACAAUAAUUGCACU ((((.((.....)).)))).....(((((((..(((((.-.((.-...)).....))))).)))))))........(((((.......))))).. ( -24.40, z-score = -3.27, R) >droSec1.super_3 1498824 93 + 7220098 GCCACCCGAUAAGGAUGGCAAAACUUUGUUACUUUGGCG-AUGG-CGACAACUUUGCCAACUAGCAAACUAUUAUAUGCAAACAAUAAUUGCACU ((((.((.....)).)))).....(((((((..((((((-(((.-...))...))))))).)))))))........(((((.......))))).. ( -25.80, z-score = -3.75, R) >droSim1.chr2L 14991225 93 + 22036055 GCCACCCGAUAAGGAUGGCAAAACUUUGUUACUUUGGCG-AUGG-CGACAACUUUGCCAACGAGCAAACUAUUAUAUGCAAACAAUAAUUGCACU ((((.((.....)).)))).....((((((.(.((((((-(((.-...))...))))))).)))))))........(((((.......))))).. ( -25.70, z-score = -3.58, R) >consensus GCCACCCGAUAAGGAUGGCAAAACUUUGUUACUUUGGCG_AUGG_CGACAACUUUGCCAACUAGCAAACUAUUAUAUGCAAACAAUAAUUGCACU ...............(((((((...(((((................))))).))))))).................................... ( -5.33 = -6.23 + 0.90)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 21:42:20 2011