| Sequence ID | dm3.chr2L |
|---|---|
| Location | 15,228,542 – 15,228,648 |
| Length | 106 |
| Max. P | 0.792273 |
| Location | 15,228,542 – 15,228,648 |
|---|---|
| Length | 106 |
| Sequences | 5 |
| Columns | 116 |
| Reading direction | reverse |
| Mean pairwise identity | 72.53 |
| Shannon entropy | 0.48358 |
| G+C content | 0.41506 |
| Mean single sequence MFE | -27.88 |
| Consensus MFE | -15.32 |
| Energy contribution | -15.80 |
| Covariance contribution | 0.48 |
| Combinations/Pair | 1.27 |
| Mean z-score | -1.48 |
| Structure conservation index | 0.55 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.70 |
| SVM RNA-class probability | 0.792273 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr2L 15228542 106 - 23011544 CAUCAUAAAGUGUCAAACAGCUGGAGUGGUUUAACAUAUUCCGCUUUACAU----------GUGUAUAAUAUAUAACGCUCCUAUGAUGGCGUUCACUUCAUCAUAAGCUGGUGAC ...........((((..(((((((((((.......(((((.(((.......----------)))...)))))....))))))((((((((.(....).))))))))))))).)))) ( -27.20, z-score = -1.91, R) >droAna3.scaffold_12916 5533136 103 + 16180835 ------CGUGUGUCGGGCUCAUGAAGCUGUUUAACAUAAUCUGCUUUACGU------GAUGAUACUACACACCCACCCAUCCCGGGGUGG-GUGCACUUCAUCAUGAACAGGUGGC ------..(((((..(((..........)))..)))))..(..(((..(((------(((((.......(((((((((......))))))-)))....))))))))...)))..). ( -37.40, z-score = -2.18, R) >droEre2.scaffold_4929 6973426 95 - 26641161 CUUCAUAAAGUGUCAAAUAGCUGGAGUGGUUUACCAUACUCCGCUUUACAU-----------------AUGUAUAACGCUCGU---AUGGCG-UCACUUCAUCAUAAGCUGGUGAC ........((((.(....(((.((((((........)))))))))...(((-----------------(((.........)))---)))..)-.))))((((((.....)))))). ( -23.20, z-score = -1.33, R) >droYak2.chr2L 2221299 113 + 22324452 CAUCAUAAAGUGUCAAACAGCUGGAGUGGUUUAACAUAUUCCGCUUUACAUAUAUAUAUGUAUGUAUAAUAUAUAACGCUUAU---AUGGCGUUCACUUCAUCAUGAGCUGGUGAC ...........((((..(((((((((((.......(((((..((..((((((....)))))).))..)))))..((((((...---..))))))))))))......))))).)))) ( -26.60, z-score = -1.19, R) >droSim1.chr2L 14979504 103 - 22036055 CAUCAUAAAGUGUCAAACAGCUGGAGUGGUUUAACAUAUUCCGCUUUACAU----------GUGUGUAAUGUAUAACGCUCGU---AUGGCGUUCACUUCAUCAUAAGCUGGUGAC ...........((((..(((((((((((........))))))(((.(((..----------((((..........))))..))---).)))...............))))).)))) ( -25.00, z-score = -0.81, R) >consensus CAUCAUAAAGUGUCAAACAGCUGGAGUGGUUUAACAUAUUCCGCUUUACAU__________AUGUAUAAUAUAUAACGCUCCU___AUGGCGUUCACUUCAUCAUAAGCUGGUGAC ...........((((..((((((((((((...........)))))))...........................((((((........))))))............))))).)))) (-15.32 = -15.80 + 0.48)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 21:42:19 2011