| Sequence ID | dm3.chr2L |
|---|---|
| Location | 15,184,436 – 15,184,531 |
| Length | 95 |
| Max. P | 0.538900 |
| Location | 15,184,436 – 15,184,531 |
|---|---|
| Length | 95 |
| Sequences | 6 |
| Columns | 97 |
| Reading direction | forward |
| Mean pairwise identity | 79.40 |
| Shannon entropy | 0.40238 |
| G+C content | 0.49608 |
| Mean single sequence MFE | -21.29 |
| Consensus MFE | -12.40 |
| Energy contribution | -12.77 |
| Covariance contribution | 0.36 |
| Combinations/Pair | 1.07 |
| Mean z-score | -1.48 |
| Structure conservation index | 0.58 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.09 |
| SVM RNA-class probability | 0.538900 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr2L 15184436 95 + 23011544 CCCUUCAUUCAGUGGCACGCCCCCU-UUUCGGACCCAA-CGCAUUUAUCAAUUAAAUGCGAACGCAGCGGCAAAUCCAGCAAUUGCAACAAUAAGAG ...........((.((((((..((.-....))......-((((((((.....))))))))......)))((.......))...))).))........ ( -18.50, z-score = -0.71, R) >droEre2.scaffold_4929 6927726 80 + 26641161 ------------UGCCACGCCCCCU----UCGGCCCAA-CGCAUUUAUCAAUUAAAUGCGAACGCAGCGGCAAAUCCAGCAAUUGCAACAAUACGAG ------------((((.((((....----..)))....-((((((((.....))))))))......).))))......((....))........... ( -20.80, z-score = -2.42, R) >droYak2.chr2L 2177371 91 - 22324452 -CCCUUCUUCGGUGCCACGCCCCCU----UCGCCCCAA-CGCAUUUAUCAAUUAAAUGCGAACGCAGCGGCAAAUCCAGCAAUUGCAACAAUAAGAG -....((((.((((((.(((.....----..)).....-((((((((.....))))))))......).))))...)).((....))......)))). ( -19.40, z-score = -1.50, R) >droSec1.super_3 1447170 97 + 7220098 CCCGCCAUUCGGUGGCACGCCCCCCGUUUCGGCCCCAAACGCAUUUAUCAAUUAAAUGCGAACGCAGCGGCAAAUACAGCAAUUGCAACAAUAAGAG ...((((..(((.((......)))))..).)))......((((((((.....))))))))...((((..((.......))..))))........... ( -25.40, z-score = -1.22, R) >droSim1.chr2L 14935968 96 + 22036055 CCCGCCAUUCGGUGGCACGCCCCCCGUUUCGGCCCCAA-CGCAUUUAUCAAUUAAAUGCGAACGCAGCGGCAAAUCCAGCAAUUGCAACAAUAAGAG ...((((..(((.((......)))))..).))).....-((((((((.....))))))))...((((..((.......))..))))........... ( -25.40, z-score = -1.21, R) >droWil1.scaffold_180764 3834794 96 + 3949147 UCCUCUACGCUCUUCCGCGCUAGCUUUAUCCAUGGCUGUCGCAUUUAUCAAUUAAAUGCAAACGCAGCAA-AAAUCCAGCAAUUGUAACAAUAAUAU .......(((......)))...(((.........(((((.(((((((.....)))))))....)))))..-......)))................. ( -18.23, z-score = -1.86, R) >consensus CCCGCCAUUCGGUGCCACGCCCCCU_UUUCCGCCCCAA_CGCAUUUAUCAAUUAAAUGCGAACGCAGCGGCAAAUCCAGCAAUUGCAACAAUAAGAG .......................................((((((((.....))))))))...((((..((.......))..))))........... (-12.40 = -12.77 + 0.36)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 21:42:17 2011