| Sequence ID | dm3.chr2L |
|---|---|
| Location | 15,172,026 – 15,172,116 |
| Length | 90 |
| Max. P | 0.916718 |
| Location | 15,172,026 – 15,172,116 |
|---|---|
| Length | 90 |
| Sequences | 12 |
| Columns | 110 |
| Reading direction | forward |
| Mean pairwise identity | 79.69 |
| Shannon entropy | 0.40440 |
| G+C content | 0.48903 |
| Mean single sequence MFE | -28.50 |
| Consensus MFE | -21.64 |
| Energy contribution | -21.36 |
| Covariance contribution | -0.28 |
| Combinations/Pair | 1.08 |
| Mean z-score | -1.49 |
| Structure conservation index | 0.76 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 1.25 |
| SVM RNA-class probability | 0.916718 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr2L 15172026 90 + 23011544 -------------------ACAUAGAU-GUUGCUCACCGUCUAACGAUGAUGGCUUUUGUUUUGGCAGUUUUGAUCGCCGGCGCGUUAAGGCAAAUGGGUCAUCAGCGUG -------------------...(((((-(........))))))(((.(((((((((((((((((((.((.(((.....))).)))))))))))))..)))))))).))). ( -28.20, z-score = -1.18, R) >droSim1.chr2L 14920151 90 + 22036055 -------------------ACAUAGAU-GUUGCUCCACGUCUAACGAUGAUGGCUUUUGUUUUGGCAGUUUUGAUCGCCGGCGCGUUAAGGCAAAUGGGUCAUCAGCGUG -------------------...(((((-((......)))))))(((.(((((((((((((((((((.((.(((.....))).)))))))))))))..)))))))).))). ( -29.70, z-score = -1.68, R) >droSec1.super_3 1434726 90 + 7220098 -------------------ACAUAGAU-GUUGCUCCACGUCUAACGAUGAUGGCUUUUGUUUUGGCAGUUUUGAUCGUCGGCGCGUUAAGGCAAAUGGGUCAUCAGCGUG -------------------...(((((-((......)))))))(((.(((((((((((((((((((.((.(((.....))).)))))))))))))..)))))))).))). ( -30.30, z-score = -2.25, R) >droAna3.scaffold_12916 5472413 100 - 16180835 ---------AACAAUUUUCCCAUGGAU-GUCUUUCCCCGUCUAACGAUGAUGGCUUUUGUUUUGGCAGUUUUGAUCGCCGGCGCGUUAAGGCAAAUGGGUCAUCAGCGUG ---------.............(((((-(........))))))(((.(((((((((((((((((((.((.(((.....))).)))))))))))))..)))))))).))). ( -27.90, z-score = -0.53, R) >droEre2.scaffold_4929 6915369 89 + 26641161 -------------------ACAUAGAU-GUCUCUCGCCGUCUAACGAUGAUGGCUUUUGUUUUGGCAGUUU-GAUCGCCUGCGCGUUAAGGCAAAUGGGUCAUCAGCGUG -------------------...(((((-(........))))))(((.(((((((((((((((((((.((..-(....)..))..)))))))))))..)))))))).))). ( -27.40, z-score = -1.03, R) >droYak2.chr2L 2164942 90 - 22324452 -------------------ACAUAGAU-GUCUCUCCCCGUCUAACGAUGAUGGCUUUUGUUUUGGCAGUUUUGAUCGCCGGCGCGUUAAGGCAAAUGGGUCAUCAGCGUG -------------------...(((((-(........))))))(((.(((((((((((((((((((.((.(((.....))).)))))))))))))..)))))))).))). ( -28.20, z-score = -1.36, R) >dp4.chr4_group1 2858994 91 - 5278887 -------------------CUAUGGUCCAUCUUUCCCUGUCUAACGAUGAUGGCUUUUGUUUUGGCAGUUUUGAUCGCCGACGCGUUAAGGCAAAUGGGUCAUCAGCGUG -------------------........................(((.(((((((((((((((((((.((.(((.....))).)))))))))))))..)))))))).))). ( -24.40, z-score = -0.58, R) >droPer1.super_5 2783244 91 + 6813705 -------------------CUAUGGUCCAUCUUUCCCUGUCUAACGAUGAUGGCUUUUGUUUUGGCAGUUUUGAUCGCCGACGCGUUAAGGCAAAUGGGUCAUCAGCGUG -------------------........................(((.(((((((((((((((((((.((.(((.....))).)))))))))))))..)))))))).))). ( -24.40, z-score = -0.58, R) >droWil1.scaffold_180764 3818484 89 + 3949147 ---------------------GCAUUCUGCUCUUCGGUCUCUAACGAUGAUGGCUUUUGUUUUGGCAGUUUUGAUCGUCGGCGCGUUAAAGCAAAUGGGUCAUCAGCGAA ---------------------((..........(((........)))(((((((((((((((((((.((.(((.....))).)))))))))))))..))))))))))... ( -25.50, z-score = -1.00, R) >droVir3.scaffold_12963 15803228 108 - 20206255 CAAUGGAAGAGAGGGAGGGGUGCAAGC-GAGUUUCUGAGGCUAACGAUGAUGGCUUUUGUUUUGGCAGUUU-GAUAGCAGGCGCGUUAAAGCAAAUGGGUCAUCAGCGAG .......((....(((((..((....)-)..)))))....))..((.(((((((((((((((((((.((((-(....)))))..)))))))))))..)))))))).)).. ( -30.20, z-score = -1.36, R) >droMoj3.scaffold_6500 24052714 88 - 32352404 --------------------CUCCAGC-AGAGGACUGGGGCUAACGAUGAUGGCUUUUGUUUUGGCAGUUU-GAUAGCAGGCGCGUUAAAGCAAAUGGGUCAUCAGCGAG --------------------(((((((-....).))))))....((.(((((((((((((((((((.((((-(....)))))..)))))))))))..)))))))).)).. ( -33.40, z-score = -3.33, R) >droGri2.scaffold_15252 1020957 84 + 17193109 ------------------------UUC-UCGCUGCUGAGGCUAACGAUGAUGGCUUUUGUUUUGGCAGUUU-GAUAGCAGGCGCGUUAAAGCAAAUGGGUCAUCAGCGAG ------------------------..(-(((((((....)).......((((((((((((((((((.((((-(....)))))..)))))))))))..))))))))))))) ( -32.40, z-score = -2.98, R) >consensus ___________________ACAUAGAC_GUCUUUCCCCGUCUAACGAUGAUGGCUUUUGUUUUGGCAGUUUUGAUCGCCGGCGCGUUAAGGCAAAUGGGUCAUCAGCGUG ............................................((.(((((((((((((((((((.(((.........)))..)))))))))))..)))))))).)).. (-21.64 = -21.36 + -0.28)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 21:42:15 2011