| Sequence ID | dm3.chr2L |
|---|---|
| Location | 15,126,115 – 15,126,222 |
| Length | 107 |
| Max. P | 0.984657 |
| Location | 15,126,115 – 15,126,222 |
|---|---|
| Length | 107 |
| Sequences | 11 |
| Columns | 121 |
| Reading direction | forward |
| Mean pairwise identity | 85.39 |
| Shannon entropy | 0.29768 |
| G+C content | 0.46569 |
| Mean single sequence MFE | -33.75 |
| Consensus MFE | -24.16 |
| Energy contribution | -24.07 |
| Covariance contribution | -0.09 |
| Combinations/Pair | 1.27 |
| Mean z-score | -2.66 |
| Structure conservation index | 0.72 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 2.17 |
| SVM RNA-class probability | 0.984657 |
| Prediction | RNA |
| WARNING | Out of training range. z-scores are NOT reliable. |
Download alignment: ClustalW | MAF
>dm3.chr2L 15126115 107 + 23011544 -----------GAUGAACGGCCAAAG--GAAAA-GCCGAAAGCAGAGCUUGUAAACAAAUUAAGAGAUUGCUUUUGGGCAGGCGACCGUCAAAAGCGUUGAGCUUGAAGGCCGAACAAAUG -----------......(((((....--.....-.((((((((((..((((.........))))...)))))))))).(((((...(((.....)))....)))))..)))))........ ( -33.00, z-score = -2.83, R) >droEre2.scaffold_4929 6867020 107 + 26641161 -----------GAUGAACGGCCAAAG--GAAAA-GCCGAAAGCAGAGCUUGUAAACAAAUUAAGAGAUUGCUUUUGGGCAGGCGACCGUCAAAAGCGUUGAGCUUGAAGGCCGAACAAAUG -----------......(((((....--.....-.((((((((((..((((.........))))...)))))))))).(((((...(((.....)))....)))))..)))))........ ( -33.00, z-score = -2.83, R) >droYak2.chr2L 2118004 107 - 22324452 -----------GAUGAACGGCCAAAG--GAAAA-GCCGAAAGCAGAGCUUGUAAACAAAUUAAGAGAUUGCUUUUGGGCAGGCGACCGUCAAAAGCGUUGAGCUUGAAGGCCGAACAAAUG -----------......(((((....--.....-.((((((((((..((((.........))))...)))))))))).(((((...(((.....)))....)))))..)))))........ ( -33.00, z-score = -2.83, R) >droSec1.super_3 1388575 107 + 7220098 -----------GAUGAACGGCCAAAG--GAAAA-GCCGAAAGCAGAGCUUGUAAACAAAUUAAGAGAUUGCUUUUGGGCAGGCGACCGUCAAAAGCGUCGAGCUUGAAGGCCGAACAAAUG -----------......(((((....--.....-.((((((((((..((((.........))))...)))))))))).(((((...(((.....)))....)))))..)))))........ ( -33.00, z-score = -2.61, R) >droSim1.chr2L 14871943 107 + 22036055 -----------GAUGAACGGCCAAAG--GAAAA-GCCGAAAGCAGAGCUUGUAAACAAAUUAAGAGAUUGCUUUUGGGCAGGCGACCGUCAAAAGCGUUGAGCUUGAAGGCCGCACAAAUG -----------..((..(((((....--.....-.((((((((((..((((.........))))...)))))))))).(((((...(((.....)))....)))))..)))))..)).... ( -32.90, z-score = -2.24, R) >dp4.chr4_group1 2803134 110 - 5278887 -----------GACGAACGGCCAAAGAAGAAAAAGCCGAAAGCAAAGCUUGUAAACAAAUUAAGAGAUUGCUUUUGGGCAGGCGACCGUCAAAAGCGUUGGGCUUGAAGGCCGAACAAAUG -----------......(((((.............((((((((((..((((.........))))...)))))))))).(((((..(((.(......).))))))))..)))))........ ( -32.30, z-score = -2.28, R) >droPer1.super_5 2725687 110 + 6813705 -----------GACGAACGGCCAAAGAAGAAAAAGCCGAAAGCAAAGCUUGUAAACAAAUUAAGAGAUUGCUUUUGGGCAGGCGACCGUCAAAAGCGUUGGGCUUAAAGGCCGAACAAAUG -----------......(((((.............((((((((((..((((.........))))...))))))))))...(((....)))..((((.....))))...)))))........ ( -30.70, z-score = -1.94, R) >droAna3.scaffold_12916 5426020 108 - 16180835 -----------GAUGAACGGCCAAAG--GAAAAAGCCGAAAGCAAAGCUUGUAAACAAAUUAAGAGAUUGCUUUCGGGCAGGCGACCGUCAAAAGCGUUGAGCUUGAAGGACGAACAAAUG -----------......((.((....--.......((((((((((..((((.........))))...)))))))))).(((((...(((.....)))....)))))..)).))........ ( -28.30, z-score = -1.70, R) >droWil1.scaffold_180764 3762259 107 + 3949147 -----------UAUGAACGGCGCAAA---AGAAAGCCAAAAGUAAAGCUUGUAAACAAAUUAAGAGAUUGCUUUUGGGCAGGCGGCCGUCAAAAGCGUUCAGCUCGAAGGCUGAACAAAUG -----------..(((.((((((...---.(....((((((((((..((((.........))))...)))))))))).)..)).))))))).....((((((((....))))))))..... ( -33.70, z-score = -2.83, R) >droVir3.scaffold_12963 15740156 112 - 20206255 AACGG--GGAAAGAGGGCGGACAGAAU--GG----CCAAAAGCAAAGCUUGUAAACAAAUUAAGAGAUUGCUUUUGGCCAGUCGGCCCUCAAAAGCGUUGAACU-GAAGGCUAAGCCAAUG ...((--.....((((((.(((....(--((----((((((((((..((((.........))))...)))))))))))))))).))))))...(((.((.....-.)).)))...)).... ( -45.90, z-score = -5.29, R) >droGri2.scaffold_15252 970988 118 + 17193109 GACGGACGGUGCACGGACGGACGGUAU--AGAAAGCCAAAAGCAAAGCUUGUAAACAAAUUAAGAGAUUGCUUUUGGGCAGGCGGCCCUCAAAAGCGUUAUACU-GAUGGCUAAGCCAAUG ..((..((.....))..))..((((((--((...((.((((((((..((((.........))))...))))))))((((.....))))......)).)))))))-).((((...))))... ( -35.40, z-score = -1.84, R) >consensus ___________GAUGAACGGCCAAAG__GAAAA_GCCGAAAGCAAAGCUUGUAAACAAAUUAAGAGAUUGCUUUUGGGCAGGCGACCGUCAAAAGCGUUGAGCUUGAAGGCCGAACAAAUG .................(((((.............((((((((((..((((.........))))...))))))))))((...(((((.......).)))).)).....)))))........ (-24.16 = -24.07 + -0.09)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 21:42:15 2011