| Sequence ID | dm3.chr2L |
|---|---|
| Location | 15,120,574 – 15,120,683 |
| Length | 109 |
| Max. P | 0.728570 |
| Location | 15,120,574 – 15,120,683 |
|---|---|
| Length | 109 |
| Sequences | 4 |
| Columns | 109 |
| Reading direction | reverse |
| Mean pairwise identity | 86.24 |
| Shannon entropy | 0.22398 |
| G+C content | 0.51886 |
| Mean single sequence MFE | -18.89 |
| Consensus MFE | -13.73 |
| Energy contribution | -15.47 |
| Covariance contribution | 1.75 |
| Combinations/Pair | 1.00 |
| Mean z-score | -1.98 |
| Structure conservation index | 0.73 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.52 |
| SVM RNA-class probability | 0.728570 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr2L 15120574 109 - 23011544 UUUUUUUUUAUUUCGCUGUCAAAACGUCAGCAAUGUCGUCCUCUUACUCUCGUCCUGGGCCUCGACCUCAUCCCGAUUCCGCCCAGUCCAGGCCGUAGUCCUGUUCCUG ..............((.(((...(((.((....)).)))............(..((((((.(((.........)))....))))))..).))).))............. ( -21.30, z-score = -1.77, R) >droSim1.chr2L 14865984 91 - 22036055 --UUUUUUUAUUUCGCUGUCAAAACGUCAGCAAUGUCGUCCUCUUACUCUCGUCCUGGGCCUCCACCUCA----------------UCCUGGCCGUAGUCCUGUUCCUG --............((((.(.....).))))....................(..(((((((.........----------------....)))).)))..)........ ( -15.32, z-score = -1.85, R) >droSec1.super_3 1382598 107 - 7220098 --UUUUUUUAUUUCGCUGUCAAAACGUCAGCAAUGUCGUCCUCUUACUCUCGUCCUGGGCCUCCACCUCAUCCCGAUUCCGCCCGGUCCUGUCCGUAGUCCUGUUCCUG --............((((.(.....).))))............((((...((..((((((....................))))))..).)...))))........... ( -15.95, z-score = -0.91, R) >droYak2.chr2L 2112431 105 + 22324452 ---UUUUUUAUUUCGCUGUCAAAACGUCAGCAAUGUCGUCCUCUCACUCUCAUCCUGGGCCUCGACCUCAUCCCUAUCCUG-CCGGUCCAGGUCGUAGUCCUUUUCCUG ---...........((((.(.....).)))).........................((((..((((((...((........-..))...))))))..))))........ ( -23.00, z-score = -3.40, R) >consensus __UUUUUUUAUUUCGCUGUCAAAACGUCAGCAAUGUCGUCCUCUUACUCUCGUCCUGGGCCUCCACCUCAUCCCGAUUCCG_CCGGUCCAGGCCGUAGUCCUGUUCCUG ..............((((.(.....).))))..............(((..((.((((((((.......................)))))))).)).))).......... (-13.73 = -15.47 + 1.75)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 21:42:13 2011