| Sequence ID | dm3.chr2L |
|---|---|
| Location | 15,107,122 – 15,107,232 |
| Length | 110 |
| Max. P | 0.684364 |
| Location | 15,107,122 – 15,107,232 |
|---|---|
| Length | 110 |
| Sequences | 11 |
| Columns | 110 |
| Reading direction | reverse |
| Mean pairwise identity | 76.37 |
| Shannon entropy | 0.50709 |
| G+C content | 0.46156 |
| Mean single sequence MFE | -25.20 |
| Consensus MFE | -12.73 |
| Energy contribution | -12.82 |
| Covariance contribution | 0.09 |
| Combinations/Pair | 1.00 |
| Mean z-score | -1.38 |
| Structure conservation index | 0.51 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.41 |
| SVM RNA-class probability | 0.684364 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr2L 15107122 110 - 23011544 UUUAAUGUCAUGUGUUAUCGGUUAAUGAUCAGCCGCGUUGCCAAGUGAUUUUCUGUCAGCGGGUGAUCAACUUUGCCUGGGAUUUCCCCACCGAACUCCGAUCUUCACCG ...........(((..(((((....((((((.(((((....)...((((.....)))))))).))))))..((((..((((.....)))).))))..)))))...))).. ( -30.20, z-score = -1.41, R) >droSim1.chr2L 14852300 110 - 22036055 UUUAAUGUCAUGUGUUAUCGGUUAAUGAUCAGCCGCGUUGCCAAGUGAUUUUCUGUCAGCGGGUGAUCAACUCUGCCUGCGAUUUCCCCUCCGAACUCCGAUCUUCACCG ...........(((..(((((....((((((.(((((....)...((((.....)))))))).))))))..............(((......)))..)))))...))).. ( -24.20, z-score = -0.19, R) >droSec1.super_3 1368908 110 - 7220098 UUUAAUGUCAUGUGUUAUCGGUUAAUGAUCAGCCGCGUUGCCAAGUGAUUUUCUGUCAGCGGGUGAUCAACUCUGCCUGGGAUUUCCCCUCCGAACUCCGAUCUUCACCG ...........(((..(((((....((((((.(((((....)...((((.....)))))))).)))))).........(((....))).........)))))...))).. ( -29.10, z-score = -1.14, R) >droYak2.chr2L 2098794 103 + 22324452 UUUAAUGUCAUGUGUUAUCGGUUAAUGAUCAGCCACGUUGCCAAGUGAUUUUCUGUCAGCGGGUGAUCAACUUUACCUUGGAUUUCCCCUCCGAUCUUCACCU------- ...........(((..(((((....((((((.((.(((((...((.......))..)))))))))))))..........((....))...)))))...)))..------- ( -24.00, z-score = -1.14, R) >droEre2.scaffold_4929 6848004 103 - 26641161 UUUAAUGUCAUGUGUUAUCGGUUAAUGAUCAGCCGCGUUGCCAAGUGAUUUUCUGUCAGCGGGUGAUCAACUUUGCCUUGGAUUUCCCCUCCGAUCUUCAACU------- ............((..(((((....((((((.(((((....)...((((.....)))))))).))))))..........((....))...)))))...))...------- ( -23.30, z-score = -0.45, R) >droAna3.scaffold_12916 5403333 105 + 16180835 UUUAAUGUCAUGUGUUAUCGGGUAAUGAUCAGCCGCGUUGCCAAGUGAUUUUCUGUCAGCGGGUGAUCAACUUAGUUGUGCAUCUCAUUCCCCUCUAUUUCCCCC----- ...((((..(((..(.((..(((..((((((.(((((....)...((((.....)))))))).)))))))))..)).)..)))..))))................----- ( -26.70, z-score = -2.12, R) >dp4.chr4_group1 2781783 102 + 5278887 UUUAAUGUCAUGUGUUAUCGGUUAAUGAUCAGCCGCGUUGCCAAGUGAUUUUCUGUCAGCGGGUGAUCAUCUUUGCUGC---CCCCACUCCCCACUCCUUCCCCA----- ...........(((....((((..(((((((.(((((....)...((((.....)))))))).)))))))....)))).---...))).................----- ( -23.10, z-score = -1.27, R) >droPer1.super_5 2703345 102 - 6813705 UUUAAUGUCAUGUGUUAUCGGUUAAUGAUCAGCCGCGUUGCCAAGUGAUUUUCUGUCAGCGGGUGAUCAUCUUUGCUGC---CCCCACUCCCCACUUCUUCCCCA----- ...........(((....((((..(((((((.(((((....)...((((.....)))))))).)))))))....)))).---...))).................----- ( -23.10, z-score = -1.32, R) >droWil1.scaffold_180764 3737289 93 - 3949147 UUUAAUGUCAUGUGUUAUCGGUUAAUGAUCAGCC--GUUGUCAAGUGAUUUUCUGUCAGCGGGUGUUCAUCUCUGCUCC---UCCAACUCCACCAUCU------------ ..................(((...((((.((.((--((((.((..........)).)))))).)).))))..)))....---................------------ ( -17.10, z-score = -0.36, R) >droVir3.scaffold_12963 15716629 94 + 20206255 UUUAAUGUCAUGUGUUAUCGGUUAAUGAUCAGCC--GUUGCCAGGUGAUUUUCUGUCAGCGGGUGAUCACCCAUU-CCCA---GUUAUUAUUGCCUCUCU---------- ..(((((...((.(..((.(((....(((((.((--((((.((((......)))).)))))).)))))))).)).-.)))---..)))))..........---------- ( -26.60, z-score = -2.77, R) >droGri2.scaffold_15252 949697 106 - 17193109 UUUAAUGUGAUGUGUUAUCGGUUAAUGAUCAGCC--GUUGCCAAGUGAUUUUAUGUCAGCGGGUGAUCACCGAUCACCCAUUCGCUUGUAUUGUUCUUCUUUUGUUCU-- ......((((((.((.((((((....(((((.((--((((.((.(......).)).)))))).))))))))))).)).)).)))).......................-- ( -29.80, z-score = -2.97, R) >consensus UUUAAUGUCAUGUGUUAUCGGUUAAUGAUCAGCCGCGUUGCCAAGUGAUUUUCUGUCAGCGGGUGAUCAACUUUGCCUCGGAUUUCACUCCCGAACUUCUACC_______ .........................((((((.((..((((.((..........)).)))))).))))))......................................... (-12.73 = -12.82 + 0.09)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 21:42:12 2011