| Sequence ID | dm3.chr2L |
|---|---|
| Location | 15,099,426 – 15,099,499 |
| Length | 73 |
| Max. P | 0.866287 |
| Location | 15,099,426 – 15,099,499 |
|---|---|
| Length | 73 |
| Sequences | 14 |
| Columns | 87 |
| Reading direction | reverse |
| Mean pairwise identity | 71.41 |
| Shannon entropy | 0.60935 |
| G+C content | 0.29984 |
| Mean single sequence MFE | -11.05 |
| Consensus MFE | -6.20 |
| Energy contribution | -7.32 |
| Covariance contribution | 1.11 |
| Combinations/Pair | 1.24 |
| Mean z-score | -0.96 |
| Structure conservation index | 0.56 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.98 |
| SVM RNA-class probability | 0.866287 |
| Prediction | RNA |
| WARNING | Out of training range. z-scores are NOT reliable. |
Download alignment: ClustalW | MAF
>dm3.chr2L 15099426 73 - 23011544 ----GGGCCAGGCUAAUUAAAUGUAAUUAAUUUUC------ACAUGCCUCAAAAUUAAAUGCAUUUAAAUCAAAG---AGAUCCGA- ----((..(.......(((((((((.((((((((.------.........)))))))).))))))))).......---.)..))..- ( -11.96, z-score = -0.85, R) >droSim1.chr2L 14844883 73 - 22036055 ----GGGCCAGGCUAAUUAAAUGUAAUUAAUUUUC------ACAUGCCUCAAAAUUAAAUGCAUUUAAAUCAAAG---AGAUCCGA- ----((..(.......(((((((((.((((((((.------.........)))))))).))))))))).......---.)..))..- ( -11.96, z-score = -0.85, R) >droSec1.super_3 1361600 73 - 7220098 ----GGGCCAGACUAAUUAAAUGUAAUUAAUUUUC------ACAUGCCUCAAAAUUAAAUGCAUUUAAAUCAAAG---AGAUCCGA- ----((..(.......(((((((((.((((((((.------.........)))))))).))))))))).......---.)..))..- ( -11.96, z-score = -1.53, R) >droYak2.chr2L 2091069 72 + 22324452 -----GGCCAGGCUAAUUAAAUGUAAUUAAUUUUC------ACAUGCCUCAAAAUUAAAUGCACUUAAAUCAAAG----AGUUCCGA -----((...((((..((((.((((.((((((((.------.........)))))))).)))).)))).......----)))))).. ( -7.00, z-score = 0.55, R) >droEre2.scaffold_4929 6840203 71 - 26641161 -----GGCCAGGCUAAUUAAAUGUAAUUAAUUUUC------ACAUGCCUCAAAA-UAAAUGCAUUUAAAUCAAAG----AGUUCCGA -----((...((((..(((((((((.(((.((((.------.........))))-))).))))))))).......----)))))).. ( -6.00, z-score = 1.03, R) >droAna3.scaffold_12916 5395418 70 + 16180835 -------CCAGGCUAAUUAAAUGUAAUUAAUUUUC------ACAUGCCUCAAAAUUAAAUGCAUUUAAAUCAAAG----AGUUCCGA -------.........(((((((((.((((((((.------.........)))))))).))))))))).......----........ ( -10.10, z-score = -1.52, R) >dp4.chr4_group1 2772933 64 + 5278887 -------------UAAUUAAAUGUAAUUAAUUUUC------ACAUGCCUCAAAAUUAAAUGCAUUUAAAUCAAAG----AGAGCCGA -------------...(((((((((.((((((((.------.........)))))))).))))))))).......----........ ( -10.10, z-score = -2.29, R) >droPer1.super_5 2694557 64 - 6813705 -------------UAAUUAAAUGUAAUUAAUUUUC------ACAUGCCUCAAAAUUAAAUGCAUUUAAAUCAAAG---AGAGCCGA- -------------...(((((((((.((((((((.------.........)))))))).))))))))).......---........- ( -10.10, z-score = -2.29, R) >droWil1.scaffold_180764 3717300 77 - 3949147 CAACCGGGGGAACUAAUUAAAUGUAAUUAAUUUUC------ACAUGCCUCAAAAUUAAAUGCAUUUAAAUCAAAG---AAACACGA- ....((((....))..(((((((((.((((((((.------.........)))))))).))))))))).......---.....)).- ( -12.10, z-score = -1.94, R) >droVir3.scaffold_12963 15704839 80 + 20206255 -GGACGCUGCAGCUAAUUAAAUGUAAUUAAUUUUC------ACAUGCCUCAAAAUUAAAUGCAUUUAAAUCGGAGCUCGGGUGGAGA -...((((..((((..(((((((((.((((((((.------.........)))))))).))))))))).....))))..)))).... ( -18.20, z-score = -1.40, R) >droMoj3.scaffold_6500 23944379 77 + 32352404 ----GGACAAAGCUAAUUAAAUGUAAUUAAUUUUC------ACAUGCCUCAAAAUUAAAUGCAUUUAAAUCGGAGCUCAAGUGCGGA ----(.((..((((..(((((((((.((((((((.------.........)))))))).))))))))).....))))...)).)... ( -15.00, z-score = -1.64, R) >droGri2.scaffold_15252 939643 74 - 17193109 -------GGAAGGUAAUUAAAUGUAAUUAAUUUUC------ACAUGCCACAAAAUUAAAUGCAUUUAAAUCCGAUCUCAAAUGCGGA -------(((.((...(((((((((.((((((((.------.........)))))))).)))))))))..))..))).......... ( -12.80, z-score = -1.39, R) >apiMel3.Group4 6451371 80 - 10796202 -----UGUUAGGAAAAUUUAAUUUCAUUAAUUUUCUUCUCAACGUUCUCUAUAAUAUCAUGAAUUUU--UCAAUGCAAGAGAAACGA -----((..(((((((((..........)))))))))..)).((((((((...((....(((.....--)))))...)))).)))). ( -11.40, z-score = -0.83, R) >triCas2.ChLG6 8744427 72 - 13544221 --------UCUGCAGAAUAGAUGAGGAAAUUUUUUU--UAAACUCGCUUUAGAACAAGUUGUUAAAACGUCAAU-----AAAUCCGA --------...........((((....(((((.(((--((((.....))))))).))))).......))))...-----........ ( -6.00, z-score = 1.56, R) >consensus _____GGCCAGGCUAAUUAAAUGUAAUUAAUUUUC______ACAUGCCUCAAAAUUAAAUGCAUUUAAAUCAAAG___AAAUCCGGA ................(((((((((.((((((((................)))))))).)))))))))................... ( -6.20 = -7.32 + 1.11)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 21:42:11 2011