| Sequence ID | dm3.chr2L |
|---|---|
| Location | 1,376,447 – 1,376,539 |
| Length | 92 |
| Max. P | 0.531019 |
| Location | 1,376,447 – 1,376,539 |
|---|---|
| Length | 92 |
| Sequences | 7 |
| Columns | 96 |
| Reading direction | reverse |
| Mean pairwise identity | 69.83 |
| Shannon entropy | 0.58168 |
| G+C content | 0.57700 |
| Mean single sequence MFE | -30.81 |
| Consensus MFE | -15.82 |
| Energy contribution | -17.13 |
| Covariance contribution | 1.31 |
| Combinations/Pair | 1.52 |
| Mean z-score | -0.85 |
| Structure conservation index | 0.51 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.07 |
| SVM RNA-class probability | 0.531019 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr2L 1376447 92 - 23011544 ACGGAUAAGAUGGCGAUGGGCGGCGGCUGGUCGUCUGAGGGUCGGGUCAGUCGAAAACCAGCACAAAGGACCUGACGACUGACCCGUGUCCU---- ..(((((....((((((.(((....))).)))))).......(((((((((((....((........))......)))))))))))))))).---- ( -40.00, z-score = -2.28, R) >droSim1.chr2L 1349758 86 - 22036055 ACGGAUAAGAUGGCGAUG------GGCUGGUCGACUGGGGGUCGGGUCAGUCCAAAACCAGCACAAAGGACCUGGCGACUGACCCGUGUCCU---- ..(((((.((((((....------.))).)))(((.....)))(((((((((.....((((..........)))).))))))))).))))).---- ( -30.70, z-score = -0.13, R) >droSec1.super_14 1324429 86 - 2068291 ACGGAUAAGAUGGCGAUG------GGCUGGUCGACUGGGGGUCGGGUCAGUCCAAAACCAGCACAAAGGACCUGGCGACUGACCCGUGUCCU---- ..(((((.((((((....------.))).)))(((.....)))(((((((((.....((((..........)))).))))))))).))))).---- ( -30.70, z-score = -0.13, R) >droYak2.chr2L 1350829 86 - 22324452 ACGGAUAAGAUGGCGAUG------GGCUGGUCGCCUGGGGGUCAGGUCAGUGGAGGACCAGCACAAAGGACACGGCGAGUGACCCGUGUCCU---- ................((------.((((((((((((.....)))))........))))))).)).(((((((((........)))))))))---- ( -33.10, z-score = -0.81, R) >droEre2.scaffold_4929 1420051 81 - 26641161 ACGGAUAAGAUGA-----------GACUGGCGAUGGGCUGGUCAGGUCAGUGCGAGACCAGCACAAAGGACAUGGCGAGUGACCCGUGUCCU---- ........(((..-----------(((..((.....))..)))..))).((((.......))))..(((((((((........)))))))))---- ( -31.50, z-score = -2.38, R) >droAna3.scaffold_12916 4838863 84 - 16180835 ACGGAUAAGAUGGCGACG------GGUCAG--GUCUGGGGGUCAGGUCAAGUCGAAACCAGCACAAAGGACCCGCUGACUGACCCGUGUCCU---- ...........(((.(((------((((((--.((.(.(((((.(((.........)))..(.....)))))).).))))))))))))))..---- ( -32.10, z-score = -1.05, R) >droWil1.scaffold_180708 9517817 91 + 12563649 AAAGAGAAAUCCGAAAUCUG----AAAUCCUUGUUUG-GGGUCAGUUUGCUUGAACACAAAGGAUUUGUGCAAAGGACCGUACCCAUGUCUUUGUC (((((.(.............----(((((((((((..-((.........))..))))...)))))))((((........))))...).)))))... ( -17.60, z-score = 0.81, R) >consensus ACGGAUAAGAUGGCGAUG______GGCUGGUCGUCUGGGGGUCAGGUCAGUCCAAAACCAGCACAAAGGACCUGGCGACUGACCCGUGUCCU____ ..(((((....((((((............))))))...(((((((....(((.....((........))....)))..))))))).)))))..... (-15.82 = -17.13 + 1.31)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 21:08:27 2011