| Sequence ID | dm3.chr2L |
|---|---|
| Location | 15,098,635 – 15,098,730 |
| Length | 95 |
| Max. P | 0.736093 |
| Location | 15,098,635 – 15,098,730 |
|---|---|
| Length | 95 |
| Sequences | 8 |
| Columns | 110 |
| Reading direction | reverse |
| Mean pairwise identity | 78.33 |
| Shannon entropy | 0.40449 |
| G+C content | 0.43558 |
| Mean single sequence MFE | -24.47 |
| Consensus MFE | -15.38 |
| Energy contribution | -15.60 |
| Covariance contribution | 0.22 |
| Combinations/Pair | 1.24 |
| Mean z-score | -1.51 |
| Structure conservation index | 0.63 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.54 |
| SVM RNA-class probability | 0.736093 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr2L 15098635 95 - 23011544 CGGACAAGGCCCCAAAAGUUUUUU----UUUUUUAGCUCCGA--CUGGU--------GGUCCAUUAUCUUACGGUAAUAUCGCCCAUAAAGCGUUGUCUGUUUUCUGUU- (((((((.((......((((....----......))))....--..(((--------(((..((((((....))))))))))))......)).))))))).........- ( -21.00, z-score = -0.95, R) >droSim1.chr2L 14844145 93 - 22036055 CGGACAAGGCCCCAAAAG--UUUU----UUUUUUGGCUCCGA--CUGGU--------GGUCCAUUAUCUUACGGUAAUAUCGCCCAUAAAGCGUUGUCUGUUUUCUGUU- (((((((.((.(((((((--....----.)))))))......--..(((--------(((..((((((....))))))))))))......)).))))))).........- ( -26.50, z-score = -2.32, R) >droSec1.super_3 1360853 92 - 7220098 CGGACAAGGC-CCAAAAG--UUUU----UUUUUUGGCUCCGA--CUGGU--------GGUCCAUUAUCUUACGGUAAUAUCGCCCAUAAAGCGUUGUCUGUUUUCUGUU- (((((((.((-(((((((--....----.)))))))......--..(((--------(((..((((((....))))))))))))......)).))))))).........- ( -26.50, z-score = -2.44, R) >droYak2.chr2L 2090263 87 + 22324452 CUGACAAGGC-CCAAAAG-----------UUUUUGGCUCUGC--CUGGU--------GGUCCACUAUCUUGCGGUAGUAUCGCCCAUAAAGCGUUGUCUGUUUGCUGUU- ..(((((.((-(((((..-----------..)))))......--..(((--------(((..((((((....))))))))))))......)).)))))...........- ( -23.60, z-score = -0.70, R) >droEre2.scaffold_4929 6839329 88 - 26641161 CGGACAAGACGCCAAAAG-----------UUUUUGGCUCUGA--CUGGU--------GGUCCACUAUCUUACGGUAAUAUCGCCCAUAAAGCGUUGUCUGUUUUCAGUU- (((((((((.((((((..-----------..)))))))))..--..(((--------(((....((((....))))..))))))..........)))))).........- ( -21.80, z-score = -0.82, R) >droAna3.scaffold_12916 5394662 109 + 16180835 CAGACAACGCCCCAAAAAGAUUGUGGCAGUUAGUGGCUUGGACUCUGUUCGUUUUUUUGGACAUUAUCUUACGGUAAUAUCACUCAUAAAGCUUUUUCUGUUUUCAGCU- ..((.((((((.(((.....))).)))((.....(((((.((....(((((......)))))((((((....)))))).....))...)))))....))))).))....- ( -20.60, z-score = 0.36, R) >dp4.chr4_group1 2772236 104 + 5278887 CAGACGACGCCCCAAAAGUUUUUU----UUUUUUGGCUUUGG--UUUCUGUUCGUUGGGUCCAUUAUCUUACGGUAAUAUCACUCAUAAAGCGUUGUCUGUUUGCGGCUG ((((((((((.(((((((......----.)))))))......--...........(((((..((((((....))))))...)))))....)))))))))).......... ( -27.60, z-score = -2.35, R) >droPer1.super_5 2693866 102 - 6813705 CAGACAACGCCCCAAAAG--UUUU----UUUUUUGGCUUUGG--UUUCUGUUCGUUGGGUCCAUUAUCUUACGGUAAUAUCACUCAUAAAGCGUUGUCUGUUUGCGGCUG ((((((((((.(((((((--....----.)))))))......--...........(((((..((((((....))))))...)))))....)))))))))).......... ( -28.20, z-score = -2.84, R) >consensus CGGACAAGGCCCCAAAAG__UUUU____UUUUUUGGCUCUGA__CUGGU________GGUCCAUUAUCUUACGGUAAUAUCGCCCAUAAAGCGUUGUCUGUUUUCUGUU_ (((((((.((.(((((((...........))))))).....................(((..((((((....))))))...)))......)).))))))).......... (-15.38 = -15.60 + 0.22)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 21:42:10 2011