| Sequence ID | dm3.chr2L |
|---|---|
| Location | 15,075,793 – 15,075,911 |
| Length | 118 |
| Max. P | 0.621811 |
| Location | 15,075,793 – 15,075,910 |
|---|---|
| Length | 117 |
| Sequences | 12 |
| Columns | 118 |
| Reading direction | forward |
| Mean pairwise identity | 82.41 |
| Shannon entropy | 0.38931 |
| G+C content | 0.41489 |
| Mean single sequence MFE | -25.20 |
| Consensus MFE | -17.04 |
| Energy contribution | -16.81 |
| Covariance contribution | -0.23 |
| Combinations/Pair | 1.20 |
| Mean z-score | -1.23 |
| Structure conservation index | 0.68 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.18 |
| SVM RNA-class probability | 0.579385 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr2L 15075793 117 + 23011544 UUUCACCGAUGACAACAACUUCGAAUCGAAUUUGCGACGUCGCAAAGGCAAAAUAAUUUCCUGUGCCAAGGAGACCAUCGAGAAUGGUGAGUGCCAAAUUUAGAACGGAAAACAAAA- .....(((...........(((((...(..((((((....))))))..).......((((((......))))))...)))))..((((....)))).........))).........- ( -26.80, z-score = -1.07, R) >droSim1.chr2L 14821093 117 + 22036055 UUUCACCGAUGACAACAACUUCGAAUCGAAUUUGCGACGUCGCAAAGGCAAAAUAAUUUCCUGUGCCAAGGAGACCAUCGAGAAUGGUGAGUGCCAAAUUCAGAACGGAAAACAAAA- .....(((.(((.......(((((...(..((((((....))))))..).......((((((......))))))...)))))..((((....))))...)))...))).........- ( -27.60, z-score = -1.16, R) >droSec1.super_3 1338260 117 + 7220098 UUUCACCGAUGACAACAACUUCGAAUCGAAUUUGCGACGUCGCAAAGGCAAAAUAAUUUCCUGUGCCAAGGAGACCAUCGAGAAUGGUGAGUGCCAAAUUCAGAACGGAAAACAAAA- .....(((.(((.......(((((...(..((((((....))))))..).......((((((......))))))...)))))..((((....))))...)))...))).........- ( -27.60, z-score = -1.16, R) >droYak2.chr2L 2052272 116 - 22324452 CUUCACCGAUGACAACAAUUUCGAAUCAAAUUUGCGACGUCGCAAAGGCAAAAUAAUUUCCUGUGCCAAGGAGACCAUCGAGAAUGGUGAGUGCCAAAUUCAGAACGAAAAACAAA-- ..................(((((.......((((((....))))))((((.......(((((......)))))(((((.....)))))...))))..........)))))......-- ( -26.40, z-score = -1.30, R) >droEre2.scaffold_4929 6815672 116 + 26641161 UUUCACCGAUGACAACAACUUCGAAUCAAAUCUGCGACGUCGCAAAGGCAAAAUAAUAUCCUGUGCCAAGGAGACCAUCGAAAAUGGUGAGUGCCAAAUUCAGACCGAAAAACAAA-- ...................((((.........((((....))))..((((........((((......)))).(((((.....)))))...))))..........)))).......-- ( -22.60, z-score = -0.57, R) >droAna3.scaffold_12916 5369737 117 - 16180835 UUUCACCGAUGACAACAAUUUUGAAUCGAAUUUGCGACGUCGCAAAGGCAAAAUAAUAUCCUGUGCCAAGGAGACCAUCGAGAAUGGUGAGUGUCAAA-GCCAAAAAACAACAAUAAU ......((((..(((.....))).))))..((((((....))))))(((.........((((......))))(((((((......))))...)))...-)))................ ( -24.20, z-score = -1.07, R) >dp4.chr4_group1 2735929 115 - 5278887 UUUCACCGAUGACAACAAUUUCGAAUCGAAUUUGCGACGUCGCAAAGGCAAAAUAAUAUCCUGUGCCAAGGAGACCAUCGAGAAUGGUGAGUAGUGCCAAAGACAAGACAACAAA--- ..((((((.((....)).((((((...(..((((((....))))))..).........((((......)))).....)))))).))))))((..((.......))..))......--- ( -25.80, z-score = -1.25, R) >droPer1.super_5 2657650 116 + 6813705 UUUCACCGAUGACAACAAUUUCGAAUCGAAUUUGCGACGUCGCAAAGGCAAAAUAAUAUCCUGUGCCAAGGAGACCAUCGAGAAUGGUGAGUAGUGCCAAAGACAAGACAACAAAU-- ..((((((.((....)).((((((...(..((((((....))))))..).........((((......)))).....)))))).))))))((..((.......))..)).......-- ( -25.80, z-score = -1.39, R) >droWil1.scaffold_180764 3659383 108 + 3949147 UUUCACCGAUGACAACAAUUUCGAAUCGAAUUUGCGACGACGCAAAGGCAAAAUAAUAUCCUGUGCCAAGGAGACUAUCGAGAAUGGUGAGUGACAAAAGACGAAAAA---------- .(((((((.((....)).((((((...(..((((((....))))))..).........((((......)))).....)))))).))))))).................---------- ( -24.30, z-score = -1.72, R) >droMoj3.scaffold_6500 23907714 105 - 32352404 AUUCAGCGAGGAUAACAAUUUCGAAUCGAAUUUGCGACGUCGCAAAGGCAAAAUAAUAUCCUGUGCCAAGGAGACAAUUGAGAAUGGUAAGAAUGCCACUCUUAU------------- .....(((((((((.....((((...))))((((((....))))))..........)))))).)))...(....)...(((((.(((((....))))).))))).------------- ( -27.30, z-score = -2.14, R) >droVir3.scaffold_12963 15663355 105 - 20206255 CCUCAGCGAGGACAACAAUUUCGAAUCGAAUUUGCGACGACGCAAAGGCAAAAUCAUAUCCUGUGCCAAGGAGACCAUCGAGAAUGGUGAGAAAAAAAAACAAAA------------- ((((...)))).((.((.((((((...(..((((((....))))))..).........((((......)))).....)))))).)).))................------------- ( -23.40, z-score = -1.57, R) >droGri2.scaffold_15252 905887 115 + 17193109 CUUCAGCGAGGAUAACAAUUUCGAAUCGAAUUUGCGACGACGCAAAGGCAAAAUAAUAUCCUGUGCCAAGGAGACCAUUGAGAACGGUAAGCCAUAUAGAUAAAUGUACAUAUAU--- .....(((((((((.....((((...))))((((((....))))))..........)))))).)))...((..(((.........)))...))......................--- ( -20.60, z-score = -0.34, R) >consensus UUUCACCGAUGACAACAAUUUCGAAUCGAAUUUGCGACGUCGCAAAGGCAAAAUAAUAUCCUGUGCCAAGGAGACCAUCGAGAAUGGUGAGUGCCAAAUUCAGAACGAAAAACAAA__ ............((.((..(((((...(..((((((....))))))..).........((((......)))).....)))))..)).))............................. (-17.04 = -16.81 + -0.23)
| Location | 15,075,794 – 15,075,911 |
|---|---|
| Length | 117 |
| Sequences | 12 |
| Columns | 124 |
| Reading direction | forward |
| Mean pairwise identity | 82.19 |
| Shannon entropy | 0.38054 |
| G+C content | 0.41467 |
| Mean single sequence MFE | -25.12 |
| Consensus MFE | -17.04 |
| Energy contribution | -16.81 |
| Covariance contribution | -0.23 |
| Combinations/Pair | 1.20 |
| Mean z-score | -1.32 |
| Structure conservation index | 0.68 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.27 |
| SVM RNA-class probability | 0.621811 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr2L 15075794 117 + 23011544 UUCACCGAUGACAACAACUUCGAAUCGAAUUUGCGACGUCGCAAAGGCAAAAUAAUUUCCUGUGCCAAGGAGACCAUCGAGAAUGGUGAG--UGCCAAAUUUAGAACGGAAAACAAAAA----- ....(((...........(((((...(..((((((....))))))..).......((((((......))))))...)))))..((((...--.)))).........)))..........----- ( -26.80, z-score = -1.20, R) >droSim1.chr2L 14821094 117 + 22036055 UUCACCGAUGACAACAACUUCGAAUCGAAUUUGCGACGUCGCAAAGGCAAAAUAAUUUCCUGUGCCAAGGAGACCAUCGAGAAUGGUGAG--UGCCAAAUUCAGAACGGAAAACAAAAA----- ....(((.(((.......(((((...(..((((((....))))))..).......((((((......))))))...)))))..((((...--.))))...)))...)))..........----- ( -27.60, z-score = -1.29, R) >droSec1.super_3 1338261 117 + 7220098 UUCACCGAUGACAACAACUUCGAAUCGAAUUUGCGACGUCGCAAAGGCAAAAUAAUUUCCUGUGCCAAGGAGACCAUCGAGAAUGGUGAG--UGCCAAAUUCAGAACGGAAAACAAAAA----- ....(((.(((.......(((((...(..((((((....))))))..).......((((((......))))))...)))))..((((...--.))))...)))...)))..........----- ( -27.60, z-score = -1.29, R) >droYak2.chr2L 2052273 115 - 22324452 UUCACCGAUGACAACAAUUUCGAAUCAAAUUUGCGACGUCGCAAAGGCAAAAUAAUUUCCUGUGCCAAGGAGACCAUCGAGAAUGGUGAG--UGCCAAAUUCAGAACGAAAAACAAA------- .................(((((.......((((((....))))))((((.......(((((......)))))(((((.....)))))...--))))..........)))))......------- ( -26.40, z-score = -1.45, R) >droEre2.scaffold_4929 6815673 115 + 26641161 UUCACCGAUGACAACAACUUCGAAUCAAAUCUGCGACGUCGCAAAGGCAAAAUAAUAUCCUGUGCCAAGGAGACCAUCGAAAAUGGUGAG--UGCCAAAUUCAGACCGAAAAACAAA------- ..................((((.........((((....))))..((((........((((......)))).(((((.....)))))...--))))..........)))).......------- ( -22.60, z-score = -0.72, R) >droAna3.scaffold_12916 5369738 117 - 16180835 UUCACCGAUGACAACAAUUUUGAAUCGAAUUUGCGACGUCGCAAAGGCAAAAUAAUAUCCUGUGCCAAGGAGACCAUCGAGAAUGGUGAG--UGUCAAA-----GCCAAAAAACAACAAUAAUA .....((((..(((.....))).))))..((((((....))))))(((.........((((......))))(((((((......))))..--.)))...-----)))................. ( -24.20, z-score = -1.11, R) >dp4.chr4_group1 2735930 114 - 5278887 UUCACCGAUGACAACAAUUUCGAAUCGAAUUUGCGACGUCGCAAAGGCAAAAUAAUAUCCUGUGCCAAGGAGACCAUCGAGAAUGGUGAG--UAGUGCC----AAAGACAAGACAACAAA---- .((((((.((....)).((((((...(..((((((....))))))..).........((((......)))).....)))))).))))))(--(..((..----.....))..))......---- ( -25.80, z-score = -1.37, R) >droPer1.super_5 2657651 116 + 6813705 UUCACCGAUGACAACAAUUUCGAAUCGAAUUUGCGACGUCGCAAAGGCAAAAUAAUAUCCUGUGCCAAGGAGACCAUCGAGAAUGGUGAG--UAGUGCC----AAAGACAAGACAACAAAUA-- .((((((.((....)).((((((...(..((((((....))))))..).........((((......)))).....)))))).))))))(--(..((..----.....))..))........-- ( -25.80, z-score = -1.47, R) >droWil1.scaffold_180764 3659384 107 + 3949147 UUCACCGAUGACAACAAUUUCGAAUCGAAUUUGCGACGACGCAAAGGCAAAAUAAUAUCCUGUGCCAAGGAGACUAUCGAGAAUGGUGAG--UGACAAA----AGACGAAAAA----------- (((((((.((....)).((((((...(..((((((....))))))..).........((((......)))).....)))))).)))))))--.......----..........----------- ( -24.10, z-score = -1.78, R) >droMoj3.scaffold_6500 23907715 105 - 32352404 UUCAGCGAGGAUAACAAUUUCGAAUCGAAUUUGCGACGUCGCAAAGGCAAAAUAAUAUCCUGUGCCAAGGAGACAAUUGAGAAUGGUAAGAAUGCCACUCUUAUA------------------- ....(((((((((.....((((...))))((((((....))))))..........)))))).)))...(....)...(((((.(((((....))))).)))))..------------------- ( -27.30, z-score = -2.21, R) >droVir3.scaffold_12963 15663356 105 - 20206255 CUCAGCGAGGACAACAAUUUCGAAUCGAAUUUGCGACGACGCAAAGGCAAAAUCAUAUCCUGUGCCAAGGAGACCAUCGAGAAUGGUGAG--AAAAAAAAACAAAAC----------------- ((((.((.(.....)..((((((...(..((((((....))))))..).........((((......)))).....)))))).)).))))--...............----------------- ( -22.60, z-score = -1.57, R) >droGri2.scaffold_15252 905888 115 + 17193109 UUCAGCGAGGAUAACAAUUUCGAAUCGAAUUUGCGACGACGCAAAGGCAAAAUAAUAUCCUGUGCCAAGGAGACCAUUGAGAACGGUAAG--CCAUAUAGAUAAAUGUACAUAUAUA------- ....(((((((((.....((((...))))((((((....))))))..........)))))).)))...((..(((.........)))...--)).......................------- ( -20.60, z-score = -0.41, R) >consensus UUCACCGAUGACAACAAUUUCGAAUCGAAUUUGCGACGUCGCAAAGGCAAAAUAAUAUCCUGUGCCAAGGAGACCAUCGAGAAUGGUGAG__UGCCAAAUUCAAAACGAAAAACAAA_______ ...........((.((..(((((...(..((((((....))))))..).........((((......)))).....)))))..)).)).................................... (-17.04 = -16.81 + -0.23)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 21:42:08 2011