| Sequence ID | dm3.chr2L |
|---|---|
| Location | 15,067,552 – 15,067,632 |
| Length | 80 |
| Max. P | 0.672106 |
| Location | 15,067,552 – 15,067,632 |
|---|---|
| Length | 80 |
| Sequences | 13 |
| Columns | 97 |
| Reading direction | reverse |
| Mean pairwise identity | 72.89 |
| Shannon entropy | 0.55624 |
| G+C content | 0.41787 |
| Mean single sequence MFE | -20.68 |
| Consensus MFE | -8.23 |
| Energy contribution | -8.42 |
| Covariance contribution | 0.20 |
| Combinations/Pair | 1.45 |
| Mean z-score | -1.66 |
| Structure conservation index | 0.40 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.39 |
| SVM RNA-class probability | 0.672106 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr2L 15067552 80 - 23011544 ---------------AAAUCAUGGACAGCGCCGGUAAAAAUCGUUAUGAACUUUUGUUCAUGGACGACGAUGUCAGCGAUCCAUUAGAUAAUCUU-- ---------------..((((((((...(((.(..(....(((((((((((....)))))).)))))...)..).))).)))))..)))......-- ( -21.40, z-score = -1.97, R) >droSim1.chr3R 6737506 64 + 27517382 ---------------ACAUCAUGGACAAUUCUGGAAAUAACCGCUACGAGCUGUUGUUCAUGGACGACGAUGACUCCUC------------------ ---------------...(((((((((((...((......))((.....)).)))))))))))................------------------ ( -13.70, z-score = -0.87, R) >droSec1.super_3 1329618 80 - 7220098 ---------------AAAUCAUGGACAGCGCCGGUAAAAAUCGUUAUGAACUUUUGUUCAUGGACGACGAUGUCAGCGAUCCAUUAGAUAAUCUU-- ---------------..((((((((...(((.(..(....(((((((((((....)))))).)))))...)..).))).)))))..)))......-- ( -21.40, z-score = -1.97, R) >droYak2.chr2L 2044319 80 + 22324452 ---------------AAAUCAUGGACAGCGCCGGUAAAAAUCGUUAUGAACUUUUGUUCAUGGACGACGAUGUCAGCGAUCCAUUAGAUAAUCUU-- ---------------..((((((((...(((.(..(....(((((((((((....)))))).)))))...)..).))).)))))..)))......-- ( -21.40, z-score = -1.97, R) >droEre2.scaffold_4929 6807605 80 - 26641161 ---------------AAAUCAUGGACAGCGCCGGUAAAAAUCGUUAUGAACUUUUGUUCAUGGACGACGAUGUCAGCGAUCCAUUAGAUAAUCUU-- ---------------..((((((((...(((.(..(....(((((((((((....)))))).)))))...)..).))).)))))..)))......-- ( -21.40, z-score = -1.97, R) >droAna3.scaffold_12916 5361579 80 + 16180835 ---------------CCAUCAUGGACAGCGCCGGUAAAAAUCGUUAUGAGCUCUUGUUCAUGGACGACGAUGUCAGCGAUCCAUUAGAUAAUCUU-- ---------------..((((((((...(((.(..(....(((((((((((....)))))).)))))...)..).))).)))))..)))......-- ( -21.40, z-score = -1.30, R) >droPer1.super_5 2648223 79 - 6813705 ----------------AAUCAUGGAUAGCGCCGGUAAAAAUCGUUAUGAACUCUUGUUCAUGGACGAUGAUGUUUCCGAACCAUUAGAUAAUCUU-- ----------------.(((((((.......(((.(((.((((((((((((....)))))).))))))....))))))..))))..)))......-- ( -17.60, z-score = -1.03, R) >dp4.chr4_group1 2726475 79 + 5278887 ----------------AAUCAUGGAUAGCGCCGGUAAAAAUCGUUAUGAACUCUUGUUCAUGGACGAUGAUGUUUCCGAACCAUUAGAUAAUCUU-- ----------------.(((((((.......(((.(((.((((((((((((....)))))).))))))....))))))..))))..)))......-- ( -17.60, z-score = -1.03, R) >droWil1.scaffold_180764 3644572 80 - 3949147 ---------------ACAUUAUGGAUAGCUCUGGGAAAAAUCGUUAUGAACUUUUGUUCAUGGACGAUGAUGUUAGCGAUCCAUUAGAUAAUCUU-- ---------------.....((((((.(((.........((((((((((((....)))))).))))))......))).))))))...........-- ( -21.16, z-score = -2.54, R) >droVir3.scaffold_12963 15653760 80 + 20206255 ---------------ACAACAUGGAUAGCGCCGGUAAUAAUCGUUAUGAACUUUUGUUCAUGGACGAUGAUGUUAGCGAUCCAUUAGAUAAUCUU-- ---------------.....((((((..(((..(((...((((((((((((....)))))).))))))..)))..)))))))))...........-- ( -22.10, z-score = -2.52, R) >droMoj3.scaffold_6500 23896757 80 + 32352404 ---------------ACAACAUGGAUAGCGCCGGUAAAAAUCGUUAUGAACUCUUGUUCAUGGACGACGAUGUUGGCGAUCCAUUAGAUAAUCUU-- ---------------.....((((((..((((..((....(((((((((((....)))))).)))))...))..))))))))))...........-- ( -24.80, z-score = -3.03, R) >droGri2.scaffold_15252 12928970 95 - 17193109 GCAAUUCGGAUUCCACACACACCAACAACACCUCCACAACCCAUCAUCAUCAUCAUGUGAGUGGUGUCGAUGUGGGCGGACUAUUCGAUAACAAU-- .....(((((((((.(.((((.(....(((((.(((((.................)))).).))))).).)))).).)))..)))))).......-- ( -21.43, z-score = -0.35, R) >anoGam1.chr2R 4073733 70 - 62725911 -------------------------UAAAUGUGGCG--AAUCGCUACGAUCUGUUCUGCAUCGACGACGAUGAGGGCGAUCCGAUCGAGGCCAUCCU -------------------------.....(((((.--..(((....((((.(((((.(((((....))))))))))))))....))).)))))... ( -23.40, z-score = -1.02, R) >consensus _______________AAAUCAUGGACAGCGCCGGUAAAAAUCGUUAUGAACUUUUGUUCAUGGACGACGAUGUCAGCGAUCCAUUAGAUAAUCUU__ ........................................(((((((((((....)))))))).))).............................. ( -8.23 = -8.42 + 0.20)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 21:42:05 2011