| Sequence ID | dm3.chr2L |
|---|---|
| Location | 15,057,998 – 15,058,049 |
| Length | 51 |
| Max. P | 0.902767 |
| Location | 15,057,998 – 15,058,049 |
|---|---|
| Length | 51 |
| Sequences | 3 |
| Columns | 53 |
| Reading direction | forward |
| Mean pairwise identity | 60.38 |
| Shannon entropy | 0.57319 |
| G+C content | 0.38044 |
| Mean single sequence MFE | -10.60 |
| Consensus MFE | -2.78 |
| Energy contribution | -2.56 |
| Covariance contribution | -0.22 |
| Combinations/Pair | 1.17 |
| Mean z-score | -2.81 |
| Structure conservation index | 0.26 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 1.16 |
| SVM RNA-class probability | 0.902767 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr2L 15057998 51 + 23011544 GAUAGCAUCGAUA--AAAAUAAGCAUUACUUACCCAAAUUUAUCGACCUGCCU ....(((((((((--((..((((.....))))......))))))))..))).. ( -8.20, z-score = -3.77, R) >droYak2.chr2L 2034022 51 - 22324452 GGUAGCAUCGAUAUUAAGGCACGAAAAUCUAGCUAA--UUUAUCGGAGUUCCU ((.(((..(((((....(((...........)))..--..)))))..))))). ( -11.30, z-score = -1.70, R) >droEre2.scaffold_4929 6797687 53 + 26641161 GAUAGCAUCGAUACCAAGAUGCGUGAAAAUCGAUAAGUCUUAUCGACCAAACU ....(((((........)))))((.....((((((.....))))))....)). ( -12.30, z-score = -2.96, R) >consensus GAUAGCAUCGAUA__AAGAUACGAAAAACUAGCUAA__UUUAUCGACCUACCU .......((((((...........................))))))....... ( -2.78 = -2.56 + -0.22)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 21:42:03 2011