| Sequence ID | dm3.chr2L |
|---|---|
| Location | 15,044,319 – 15,044,416 |
| Length | 97 |
| Max. P | 0.680462 |
| Location | 15,044,319 – 15,044,416 |
|---|---|
| Length | 97 |
| Sequences | 12 |
| Columns | 112 |
| Reading direction | forward |
| Mean pairwise identity | 73.96 |
| Shannon entropy | 0.50872 |
| G+C content | 0.48515 |
| Mean single sequence MFE | -29.61 |
| Consensus MFE | -14.10 |
| Energy contribution | -13.80 |
| Covariance contribution | -0.30 |
| Combinations/Pair | 1.38 |
| Mean z-score | -1.50 |
| Structure conservation index | 0.48 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.40 |
| SVM RNA-class probability | 0.680462 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr2L 15044319 97 + 23011544 CCGACUGCUGCCGUUUUUCACACGCUGGGG--------AAAAAUGGAAAUUCUC-GCAAAAU-ACAAUGCGUGGGAAAUCGGUGGCGUGGGAGUCAGGCAAGAAAAU----- ((.((.((..(((.(((((.((((((((((--------((.........)))))-.))....-.....)))))))))).)))..)))).))................----- ( -30.00, z-score = -1.73, R) >droSim1.chr2L 14791398 97 + 22036055 CCGACUGCUGCCGUUUUUCACACGCUGGGG--------AAAAAUGGAAAUUCUC-GCAAAAU-ACAAUGCGUGGGAAAUCGGUGGCGUGGGAGUCAGCCAAGAAAAU----- ((.((.((..(((.(((((.((((((((((--------((.........)))))-.))....-.....)))))))))).)))..)))).))................----- ( -30.00, z-score = -1.49, R) >droSec1.super_3 1306453 97 + 7220098 CCGACUGCUGCCGUUUUUCACACGCUGGGG--------AAAAAUGGAAAUUCUC-GCAAAAU-ACAAUGCGUGGGAAAUCGGUGGCGUGGGAGUCAGCCAAGAAAAU----- ((.((.((..(((.(((((.((((((((((--------((.........)))))-.))....-.....)))))))))).)))..)))).))................----- ( -30.00, z-score = -1.49, R) >droYak2.chr2L 2020432 97 - 22324452 CCGACUGCUGCUGUUUUUCACACGCUUUGG--------AAAAAUGGAAAUUCUC-GCAAAAU-ACAAUGCGUGGGAAAUCGGUGGCGUGGGAGUCAGCUAAGAAAAU----- ((.((.((..(((.(((((.(((((.(((.--------.....((((.....))-.))....-.))).)))))))))).)))..)))).))................----- ( -28.80, z-score = -2.19, R) >droEre2.scaffold_4929 6783914 96 + 26641161 CCGACUGCUGCUGUUUUUCACACGCUGGGG---------AAAAUGGAAAUUCUC-GCAAAAU-ACAAUGCGUGGGAAAUCGGUGGCGUGAGAGCUAGCCAAGGAAAU----- ((....((..(((.(((((.((((((((((---------((........)))))-.))....-.....)))))))))).)))..))((....)).......))....----- ( -27.50, z-score = -1.06, R) >droAna3.scaffold_12916 15363787 101 - 16180835 UUGACUGCUGCCGUUUUUCACACGCUGGGG---------AAAAUGGAAAUUCUC-GCAAAAU-ACAAUGCGUGGGAAAUCGGUUGCGUGGGAGCCGACCGACCAAGAAAUAU (((...((.((((.(((((.((((((((((---------((........)))))-.))....-.....)))))))))).)))).))((.((......)).)))))....... ( -26.70, z-score = -0.22, R) >dp4.chr4_group1 2701934 100 - 5278887 UUGACUGCUGCCGUUUUUCACACGCUGUGG--------AAAAAUGGAAAUUCUCCGCAAAAU-ACAAUGCGUGGGAAAUCGUUUGCGUGGGAGCCCAGCCAAGAAAAUU--- ..........(((((((((.(((...))))--------))))))))...(((((((((....-....)))).))))).((....((.(((....)))))...)).....--- ( -26.90, z-score = -0.51, R) >droPer1.super_5 2623375 100 + 6813705 UUGACUGCUGCCGUUUUUCACACGCUGUGG--------AAAAAUGGAAAUUCUCCGCAAAAU-ACAAUGCGUGGGAAAUCGGUUGCGUGGGAGCCCAGCCAAGAAAAUU--- (((...((.((((.(((((.((((((((((--------(..(((....))).))))))....-.....)))))))))).)))).)).(((....)))..))).......--- ( -30.60, z-score = -1.42, R) >droWil1.scaffold_180764 3601067 105 + 3949147 UAAAGUGUUGAGGUUUUUCACACGCUGCUGCUGCUGCUGGAAAUGGAAAUUCUC-GCAAAAUUACAAUGCCUGGGAAAUUUGUGGCGUGGGAGCCUCUAAAAGAAA------ .........(((((((....(((((..(.((....))........(((.(((((-(((.........)))..))))).))))..))))).))))))).........------ ( -27.20, z-score = -0.51, R) >droMoj3.scaffold_6500 23871243 87 - 32352404 AAGCCGGCUGCCGGUUUUCACACGCUGUGA----------------AAAUUCUA---AACAC-ACAAUGCGUGGGAAAUCGCCAGC-CGGUUGUGUGGGAGCCAAAAU---- .(((((((((.((((((((.(((((((((.----------------........---....)-)))..))))))))))))).))))-)))))...(((...)))....---- ( -36.92, z-score = -3.67, R) >droVir3.scaffold_12963 15633134 85 - 20206255 AAGCCGGCUGCCGGUUUUCACACGCUGUGA----------------AAAUUCUA---ACCAU-ACAAUGCGUGGGAA-UUGCCAGC-CGGUUGUGUGGGAGCCAAAA----- .(((((((((.(((((..(((.((.((((.----------------........---....)-))).)).)))..))-))).))))-)))))...(((...)))...----- ( -30.42, z-score = -1.51, R) >droGri2.scaffold_15252 870217 85 + 17193109 AAGCCGGCUGCCGAUUUUCACACGCUUUAA----------------AAAUUCUA---GCCAC-ACAAUGCGUGGGAA-UCGCCAGC-CGGUUGUGUGGGAGUCUAAA----- .(((((((((.((((((...(((((.....----------------........---.....-.....))))).)))-))).))))-)))))...............----- ( -30.30, z-score = -2.27, R) >consensus CCGACUGCUGCCGUUUUUCACACGCUGUGG________AAAAAUGGAAAUUCUC_GCAAAAU_ACAAUGCGUGGGAAAUCGGUGGCGUGGGAGUCAGGCAAGAAAAA_____ ......((((.((.(((((.(((((...........................................)))))))))).)).)))).......................... (-14.10 = -13.80 + -0.30)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 21:42:02 2011