| Sequence ID | dm3.chr2L |
|---|---|
| Location | 1,375,371 – 1,375,467 |
| Length | 96 |
| Max. P | 0.517203 |
| Location | 1,375,371 – 1,375,467 |
|---|---|
| Length | 96 |
| Sequences | 5 |
| Columns | 113 |
| Reading direction | reverse |
| Mean pairwise identity | 58.81 |
| Shannon entropy | 0.68385 |
| G+C content | 0.36537 |
| Mean single sequence MFE | -20.10 |
| Consensus MFE | -5.88 |
| Energy contribution | -6.16 |
| Covariance contribution | 0.28 |
| Combinations/Pair | 1.44 |
| Mean z-score | -1.61 |
| Structure conservation index | 0.29 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.05 |
| SVM RNA-class probability | 0.517203 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr2L 1375371 96 - 23011544 ---AAUGGAAUCGUUUCU-CCAGGGCAGAUAUGCUUAAAUACAUAGAAACUGUCUGUAAAUACACUUGG-GGAAUACACCUAC-CACUAUAUGAUUCAUUUG----------- ---....(((((((((((-((((((((....)))........(((((.....))))).......)))))-)))).........-......))))))).....----------- ( -21.46, z-score = -1.84, R) >droSim1.chr2L 1348713 94 - 22036055 ---AAUGGAAUCGUUUCC-CCA-GGCAGAUAUGCUUAAAUACAUAGAAACUGCCAGUAAAUACACCUGG-AGAA-AUAUCAAC-CAUUUUAUGAUUAAUAUG----------- ---(((((....(((((.-(((-(((((.((((........))))....))))).((....))...)))-.)))-)).....)-))))..............----------- ( -18.80, z-score = -2.09, R) >droSec1.super_14 1323395 87 - 2068291 ---AAUGGAAUCGUUUCC-CCAGGGCAGAUAUGCUUAAAUACAUAGAAACUGCCAGAAAAUACACCUGG-AGAA-AUACUUACUCCUUAUUUG-------------------- ---...(((...(((((.-(((((((((.((((........))))....))))).(......)..))))-.)))-))......))).......-------------------- ( -18.70, z-score = -2.07, R) >droEre2.scaffold_4929 1419026 108 - 26641161 ---AAUGGAAUCGUUUGC-CCAGGGCGGGAAUGCUUAAAUACAUGGAAACUGCCAGUAAAUACACGAGA-AAAACACUUACACUUACUUUAUGAAUAUCCUUAUAAUCAUUUG ---(((((..((((((((-....(((((..(((........))).....))))).))))....))))..-..................((((((......))))))))))).. ( -14.10, z-score = 0.88, R) >droAna3.scaffold_12916 4837901 97 - 16180835 CAUAACCGAAUUACGUACACUUGGCCUGAAAUUCUGAUUAGCAGGAUAAUUGGCUAAAUGCUUAUUAAGUAGUACGUUAGUUAGCCUUCUUCGGUUG---------------- ..((((((((..((((((..((((((....((((((.....))))))....)))))).((((.....))))))))))............))))))))---------------- ( -27.44, z-score = -2.91, R) >consensus ___AAUGGAAUCGUUUCC_CCAGGGCAGAUAUGCUUAAAUACAUAGAAACUGCCAGUAAAUACACCUGG_AGAA_AUACCUAC_CAUUAUAUGAUUA___U____________ .......................(((((.((((........))))....)))))........................................................... ( -5.88 = -6.16 + 0.28)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 21:08:26 2011