| Sequence ID | dm3.chr2L |
|---|---|
| Location | 15,030,707 – 15,030,833 |
| Length | 126 |
| Max. P | 0.998819 |
| Location | 15,030,707 – 15,030,833 |
|---|---|
| Length | 126 |
| Sequences | 14 |
| Columns | 144 |
| Reading direction | reverse |
| Mean pairwise identity | 69.61 |
| Shannon entropy | 0.64704 |
| G+C content | 0.41880 |
| Mean single sequence MFE | -35.20 |
| Consensus MFE | -18.33 |
| Energy contribution | -18.45 |
| Covariance contribution | 0.12 |
| Combinations/Pair | 1.45 |
| Mean z-score | -2.37 |
| Structure conservation index | 0.52 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 3.50 |
| SVM RNA-class probability | 0.998819 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr2L 15030707 126 - 23011544 GCGUUCUUCGUCCUCUUUCGAUAUGGCUGAAUCGGGAUUGUAUUUCGAUUCGGCCUUAUCCUUGGGAUGACGUAUAACCUCAAUGACCU--GUGCGA---AUAGAGAU-CAUUACAAAUGUGCUACUUCUUU------------ (((((...((((.((((..((((.((((((((((..((...))..)))))))))).))))...)))).))))...)))...((((((((--((....---)))).).)-))))........)).........------------ ( -39.20, z-score = -3.38, R) >droSim1.chr2L 14775159 126 - 22036055 GCGUUCUUCGUCCUCCUUCGAUAUGGCUGAAUCGGGAUUGUAUUUCGAUUCGGCCUUAUCCUUCGGAUGACGUAUGACCUCAAUGACCU--GUGCGA---AUAGAGAG-CAUUACGAGUGUGCUACUUCAUU------------ ..(((...((((.(((...((((.((((((((((..((...))..)))))))))).))))....))).))))...)))...(((((.((--((....---))))((((-(((.......))))).)))))))------------ ( -41.20, z-score = -2.60, R) >droSec1.super_3 1292702 126 - 7220098 GCGUUCUUCGUCCUCCUUCGAUAUGGCUGAAUCGGGAUUGUAUUUCGAUUCGGCCUUAUCCUUGGGAUGACGUAUGACCUCAAUGACCU--GUGCGA---AUAGAGAG-CAUUACAAAUGUGCUACUUCAUU------------ ..(((...((((.((((..((((.((((((((((..((...))..)))))))))).))))...)))).))))...)))...(((((.((--((....---))))((((-(((.......))))).)))))))------------ ( -43.70, z-score = -3.85, R) >droYak2.chr2L 15139394 126 - 22324452 GCGUUCUUCAUCCUCCUUCGAAAUGGCUGAAUCGGGAUUGUAUUUCGAUUCGGCCUUAUCCUUGGGAUGACGUAUGACCUCAAUGACCU--AAGCGA---AUAAAGAG-CAUUACAAAUGUGGGACUUCUUU------------ ((.....(((((((.....((...((((((((((..((...))..))))))))))...))...)))))))(((.((....)))))....--..))..---..((((((-..((((....))))...))))))------------ ( -34.20, z-score = -1.22, R) >droEre2.scaffold_4929 6770365 126 - 26641161 GCGUUCUUCAUCCUCCUUCGAUAUGGCUGAAUCGGGAUUGUAUUUCGAUUCGGCCUUAUCCUUGGGAUGACGUAUAACCUCAAUGACCU--AUGCGA---AUAGAGAG-CGUUACGAAUGUGCGACUACGUU------------ ((((((((((((((.....((((.((((((((((..((...))..)))))))))).))))...)))))))((((((............)--))))).---....))))-)))....((((((....))))))------------ ( -43.70, z-score = -3.54, R) >droAna3.scaffold_12916 15350409 123 + 16180835 GCGUUCCUCAUCCUCUUUCGAUAUGGCUGAAUCAGGAUUAUACUUCGAUUCAGCUUUAUCCUUCGGAUGUCGUAUGACCUCAAUUACCU---AGAGAUUGGUUUACUA-UUUUAUUACUUUGUGGUU----------------- (((.....(((((......((((.((((((((((((......))).))))))))).))))....))))).)))..((((.(((......---..(((.(((....)))-.)))......))).))))----------------- ( -30.64, z-score = -2.38, R) >dp4.chr4_group1 2680874 125 + 5278887 GCGUUCUUCAUCCUCCUUCGAUAUGGCCGAAUCGGGAUUGUAUUUCGACUCGGCUUUAUCCUUGGGAUGUCGUAUGACCUCAAUGACCU--GCGAAAGGCAUUUGCAU-CGCUCUUAAUUGGUUAUUA---------------- .(((.(..((((((.....((((.((((((.(((..((...))..))).)))))).))))...))))))..).))).....(((((((.--((((...((....)).)-)))........))))))).---------------- ( -39.60, z-score = -2.72, R) >droPer1.super_5 2608554 125 - 6813705 GCGUUCUUCAUCCUCCUUCGAUAUGGCCGAAUCGGGAUUGUAUUUCGACUCGGCUUUAUCCUUGGGAUGUCGUAUGACCUCAAUGACCU--GCGAAAGGCAUUUGCAU-CGCUCUUAAUUGGUUAUUA---------------- .(((.(..((((((.....((((.((((((.(((..((...))..))).)))))).))))...))))))..).))).....(((((((.--((((...((....)).)-)))........))))))).---------------- ( -39.60, z-score = -2.72, R) >droWil1.scaffold_180764 3575578 121 - 3949147 ACGUUCUUCAUCCUCUUUCGAUAUAGCCGAAUCGGGAUUAUAUUUCGAUUCAGCUUUAUCUUUAGGAUGUCUUAUGACCUCAAUGACCU-UAAAAAAAUAGUUU-UUA-UUGAUUCAAUUUGUC-------------------- .(((....((((((.....((((.(((.((((((..((...))..)))))).))).))))...))))))....)))...(((((((...-..............-)))-))))...........-------------------- ( -27.93, z-score = -2.85, R) >droVir3.scaffold_12963 15617765 124 + 20206255 GCGUUCCUCGUCCUCCUUCGAUAUGGCCGAGUCUGGAUUGUACUUGGAUUCGGCUUUAUCUUUUGGAUGUCGUAUGACCUCAAUCACCUAAAGAUCGUAGAUAUUUAAAGGGUAUUGAUUUUUU-------------------- (((.....)))......((((((((((((((((..(.......)..)))))))))....((((((((((((.(((((.((...........)).))))))))))))))))))))))))......-------------------- ( -35.50, z-score = -2.17, R) >droMoj3.scaffold_6500 23856835 127 + 32352404 GCGUUCCUCAUCCUCUUUGGAUAUGGCCGAGUCUGGAUUAUACUUGGAUUCGGCUUUAUCUUUUGGAUGUCGUAUGACCUCAAUGACCU---GAAAAUUAAUAUAUACAUGCAAUAAAGCGUGAAUUUCU-------------- .(((.(..(((((.....(((((.(((((((((..(.......)..))))))))).)))))...)))))..).))).............---...............(((((......))))).......-------------- ( -36.70, z-score = -3.36, R) >droGri2.scaffold_15252 855825 126 - 17193109 GCGUUCCUCAUCCUCCUUCGAUAUGGCCGAGUCCGGAUUGUACUUUGAUUCGGCCUUAUCCUUUGGAUGUCGUAUGACCUCAAUGACCUAAGAUCAAUUGAUAUAUUA---GUACAAGCUCUAUGAUAU--------------- ........(((((......((((.(((((((((.((......))..))))))))).))))....)))))(((((.((.((...((..((((.(((....)))...)))---)..)))).)))))))...--------------- ( -32.20, z-score = -1.73, R) >anoGam1.chr3R 581332 144 + 53272125 UCGUUCCUCGUCUUCCUUUGAAAUUCCAGUAUCAUUGCUGAAUUUGGAUUCGACCUUAUCCUUUGGAUGUCGCAAUACUUCUAUCACCUGCAUUGAAUGAACAAAUAAAAUUCAUGUGAAUAACAUGUUGGCGCGUAUUGCUUU .........(.(.(((....((((((.((((....))))))))))((((........))))...))).).)((((((((((..(((.......)))..)))...........(((((.....))))).......)))))))... ( -26.70, z-score = -0.23, R) >triCas2.singleUn_291 283 125 + 1105 ACGCUCUUCAUCUUCUUUGGAAAUUCCAGCGUCUGGAUUGUACUUGCUUUCAGCCUUAUCCUUAGGGUGUCGUAUUACUUCAAUCACCUG-AUAGAACU--UAAGCCUUAGUCAUAAUCAUUUCCCCU---------------- (((((.....(((.....)))......)))))...(((((((((.((((...((((((....))))))..........(((.(((....)-)).)))..--.))))...))).)))))).........---------------- ( -21.90, z-score = -0.44, R) >consensus GCGUUCUUCAUCCUCCUUCGAUAUGGCCGAAUCGGGAUUGUAUUUCGAUUCGGCCUUAUCCUUGGGAUGUCGUAUGACCUCAAUGACCU__AUGCAA___AUAUAGAA_CGUUAUAAAUUUGUUACUU________________ (((.....(((((......((...((((((((((((.......))))))))))))...))....))))).)))....................................................................... (-18.33 = -18.45 + 0.12)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 21:41:59 2011