| Sequence ID | dm3.chr2L |
|---|---|
| Location | 14,963,025 – 14,963,118 |
| Length | 93 |
| Max. P | 0.525993 |
| Location | 14,963,025 – 14,963,118 |
|---|---|
| Length | 93 |
| Sequences | 11 |
| Columns | 103 |
| Reading direction | reverse |
| Mean pairwise identity | 76.95 |
| Shannon entropy | 0.50235 |
| G+C content | 0.41957 |
| Mean single sequence MFE | -22.54 |
| Consensus MFE | -12.21 |
| Energy contribution | -11.96 |
| Covariance contribution | -0.25 |
| Combinations/Pair | 1.06 |
| Mean z-score | -1.11 |
| Structure conservation index | 0.54 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.06 |
| SVM RNA-class probability | 0.525993 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr2L 14963025 93 - 23011544 ----------AGGGGGGAGAUGAAGGGAAAAAUGAAGUGCAAUAAAAGUCAAAUGGCCACGUUAACAAUGUGGAAAAUUUUUAUGGUCCUGCUUCUGGCCAUG ----------.((.(((((.....((((...((((((..........(((....)))(((((.....)))))......))))))..)))).)))))..))... ( -18.20, z-score = 0.49, R) >droAna3.scaffold_12916 15293763 85 + 16180835 ------------------GGAGAACUGGAAAAUGAAGUGCAAUAAAAGUCAAAUGGCCACGUUAACAAUGUGGAAAAUUUUUAUGGCCCUGCUCCUUGCGAUA ------------------((((.(((.........)))((.((((((((.......((((((.....))))))...)))))))).))....))))........ ( -16.70, z-score = -0.10, R) >droEre2.scaffold_4929 6708902 96 - 26641161 -------AGGGAGAAGCGGAGAAAGGGGAAAAUGAAGUGCAAUAAAAGUCAAAUGGCCACGUUAACAAUGUGGAAAAUUUUUAUGGUCCUGCUUCUGGCGAUG -------.(..((((((((.((..(..((((.(((..(.......)..))).....((((((.....))))))....))))..)..))))))))))..).... ( -21.90, z-score = -1.08, R) >droYak2.chr2L 15076122 92 - 22324452 -----------GGGGGUGUAGAAAGGGGAAAAUGAAGUGCAAUAAAAGUCAAAUGGCCACGUUAACAAUGUGGAAAAUUUUUAUGGUCCUGCUGCUGGCGAUG -----------((((.((((((((........(((..(.......)..))).....((((((.....))))))....)))))))).))))((.....)).... ( -17.60, z-score = 0.28, R) >droSim1.chr2L 14714608 92 - 22036055 ----------AGGCGGGAGA-AGGGGGGAAAAUGAAGUGCAAUAAAAGUCAAAUGGCCACGUUAACAAUGUGGAAAAUUUUUAUGGUCCUGCUUCUGGCCAUG ----------.(((.(((..-.((.((((..((((((..........(((....)))(((((.....)))))......))))))..)))).))))).)))... ( -25.50, z-score = -1.66, R) >droSec1.super_3 1232998 92 - 7220098 ----------AGGCGGGAGA-AGGGGGGAAAAUGAAGUGCAAUAAAAGUCAAAUGGCCACGUUAACAAUGUGGAAAAUUUUUAUGGUCCUGCUUCUGGCCAUG ----------.(((.(((..-.((.((((..((((((..........(((....)))(((((.....)))))......))))))..)))).))))).)))... ( -25.50, z-score = -1.66, R) >droPer1.super_5 2519794 102 - 6813705 -GGAAAAGGGAGCAAGGAAAAGCCGUGGAAAAUGAAGUGCAAUAAAAGUCAAAUGGCCACGUUAACAAUGUGGAAAAUUUUUAUGGCCCUGCUCUGUGGAAUG -.....(.((((((.((....((((((((((.(((..(.......)..))).....((((((.....))))))....)))))))))))))))))).)...... ( -27.80, z-score = -2.30, R) >dp4.chr4_group1 2589594 102 + 5278887 -GGAAAAGGGAGCAAGGAAAAGCCGUGGAAAAUGAAGUGCAAUAAAAGUCAAAUGGCCACGUUAACAAUGUGGAAAAUUUUUAUGGCCCUGCUCUGUGGAAUG -.....(.((((((.((....((((((((((.(((..(.......)..))).....((((((.....))))))....)))))))))))))))))).)...... ( -27.80, z-score = -2.30, R) >droVir3.scaffold_12963 15544673 84 + 20206255 -------GUAAAAUAGGAGCAGCGCAUGAAAAUGAAGUGCAAUAAAAGUCAAAUGGCCACGUUAACAAUGUGGAAAAUUUUUAUGGCUCUG------------ -------........(((((.((((...........)))).((((((((.......((((((.....))))))...)))))))).))))).------------ ( -20.30, z-score = -2.23, R) >droMoj3.scaffold_6500 23780129 95 + 32352404 -------AGAAAAUAGGAGCAGCGCAUGAAAAUGAAGUGCAAUAAAAGUCAAAUGGCCACGUUAACAAUGUGGAAAAUUUUUAUGGCUCUGCUGGCUGUGGC- -------...........(((((.(((....))).((.((.((((((((.......((((((.....))))))...)))))))).)).))....)))))...- ( -22.80, z-score = -0.73, R) >droGri2.scaffold_15252 785333 100 - 17193109 CUAUAAUCUCGAGAAAAGGCAGCGCAUGAAAAUGAAGUGCAAUAAAAGUCAAAUGGCCACGUUAACAAUGUGGAAAAUUUUUAUGGCCCUGCUGGCCGUG--- .................((((((.(((....))).((.((.((((((((.......((((((.....))))))...)))))))).)).))))).)))...--- ( -23.80, z-score = -0.90, R) >consensus __________AGGAAGGAGAAGCGGGGGAAAAUGAAGUGCAAUAAAAGUCAAAUGGCCACGUUAACAAUGUGGAAAAUUUUUAUGGCCCUGCUUCUGGCGAUG ...................................((.((.((((((((.......((((((.....))))))...)))))))).)).))............. (-12.21 = -11.96 + -0.25)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 21:41:56 2011