| Sequence ID | dm3.chr2L |
|---|---|
| Location | 14,962,447 – 14,962,540 |
| Length | 93 |
| Max. P | 0.661106 |
| Location | 14,962,447 – 14,962,540 |
|---|---|
| Length | 93 |
| Sequences | 10 |
| Columns | 106 |
| Reading direction | forward |
| Mean pairwise identity | 67.44 |
| Shannon entropy | 0.67197 |
| G+C content | 0.44265 |
| Mean single sequence MFE | -22.87 |
| Consensus MFE | -10.06 |
| Energy contribution | -10.53 |
| Covariance contribution | 0.47 |
| Combinations/Pair | 1.28 |
| Mean z-score | -0.93 |
| Structure conservation index | 0.44 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.36 |
| SVM RNA-class probability | 0.661106 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr2L 14962447 93 + 23011544 -----------UUCGCUGCCCCA-UUCUGUUCAAAAUUCUAUAAGCAUUUUCUUGGGUGCUAAUGGA-CAGUUUAGAGAGGCAACCAAACGAGAAGCUACUCCUAC -----------.....((((...-(((((..(.....(((((.(((((((....))))))).)))))-..)..))))).)))).......(((......))).... ( -18.90, z-score = 0.02, R) >droAna3.scaffold_12916 15293160 86 - 16180835 -----------------UUCCCA-ACCUGUUCAAAAUUCCAUAAGCAUUUGCUUUGCUGCUAAUGGA-CAGUUUAGAGGGGCGACCAA-CGAGGAGCUGCACGGAC -----------------......-..((((.......(((((.((((...((...)))))).)))))-((((((.(..((....))..-)...)))))).)))).. ( -21.30, z-score = -0.21, R) >droEre2.scaffold_4929 6708333 93 + 26641161 -----------UUGGCUGUCCCA-UCCUGUUCAAAAUUCUAUAAGCAUUUGCUUGGGUGCUAAUGGA-CAGUUUAGAGAGGCAACCAAACGAGAAGCUACUCGUAC -----------((((.(((((((-..(((((((........(((((....)))))........))))-)))..).).).)))).))))(((((......))))).. ( -25.99, z-score = -1.58, R) >droYak2.chr2L 15075566 93 + 22324452 -----------UCCGCUGCCCCA-UCCUGUUCAAAAUUCUAUAAGCAUUUGCUUGGGUGCUAAUGGA-CAGUUUAGAGAGGCAGCCAAACGAGAAGCUACUCGUAC -----------...(((((((((-..(((((((........(((((....)))))........))))-)))..).).).))))))...(((((......))))).. ( -29.79, z-score = -2.57, R) >droSim1.chr2L 14714038 93 + 22036055 -----------UUUGCUGCCCCA-UCCUGUUCAAAAUUCUAUAAGCAUUUGCUUGGGUGCUAAUGGA-CAGUUUAGAGAGGCAACCAAACGAGAAGCUACUCGUAC -----------.(((.(((((((-..(((((((........(((((....)))))........))))-)))..).).).))))..)))(((((......))))).. ( -23.69, z-score = -1.03, R) >droSec1.super_3 1232421 93 + 7220098 -----------UUUGCUGCCCCA-UCCUGUUCAAAAUUCUAUAAGCAUUUGCUUGGGUGCUAAUGGA-CAGUUUAGAGAGGCAACCAAACGAGAAGCUACUCGUAC -----------.(((.(((((((-..(((((((........(((((....)))))........))))-)))..).).).))))..)))(((((......))))).. ( -23.69, z-score = -1.03, R) >droWil1.scaffold_180764 3472288 90 + 3949147 -----------UCCGCUAUCCCGGUUUUGUUAAAAAUUCCAUAAGCAUUGGCUUUUGUGCUAAUGGA-CAGUUUAGUCGUGCAACC----GAAAAGCGCAGAGAAG -----------..((((....(((((.(((((((...(((((.(((((........))))).)))))-...))))).))...))))----)...))))........ ( -23.50, z-score = -1.58, R) >dp4.chr4_group1 2589008 76 - 5278887 ------------------------------UUAAAAUUCCACAAGCAUUUGCUUGGGUGCUAAUGGAACAGUUUAGAGGAGCAGCCAGGCAGGAGACGCCCCAGAA ------------------------------..............((...(((((((.((((..((((....))))....)))).)))))))(....)))....... ( -21.50, z-score = -1.15, R) >droMoj3.scaffold_6500 23779474 101 - 32352404 CUUGCCCCGGCACUGUCAUGUACUUGAUUUUAAAAAUUCCAUAAGCGUAUGUCUU-CUGCUAAUGGA-GAGUUUAGACUGGCGACUG---GCGCCUUUUAUCGCAC ..(((....)))..((((......))))((((((..((((((.((((........-.)))).)))))-)..))))))..((((....---.))))........... ( -22.70, z-score = -0.12, R) >droVir3.scaffold_12963 15544053 98 - 20206255 --UUUGCUGACAUGUUUUUUUUUUUUUUCUUUUAAAUUCCAUAAGCGUAUUUUUU-GUGCUAAUGGA-GAGUUUAGACGAGCAAGUG---GAGCCUUU-AUCGCUC --((((((............................((((((.((((((.....)-))))).)))))-).((....)).))))))..---((((....-...)))) ( -17.60, z-score = -0.07, R) >consensus ___________UUCGCUGUCCCA_UCCUGUUCAAAAUUCCAUAAGCAUUUGCUUGGGUGCUAAUGGA_CAGUUUAGAGAGGCAACCAAACGAGAAGCUACUCGUAC .........................(((.((.(((..(((((.(((((........))))).)))))....))).)).)))......................... (-10.06 = -10.53 + 0.47)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 21:41:55 2011