| Sequence ID | dm3.chr2L |
|---|---|
| Location | 14,930,415 – 14,930,475 |
| Length | 60 |
| Max. P | 0.942842 |
| Location | 14,930,415 – 14,930,475 |
|---|---|
| Length | 60 |
| Sequences | 5 |
| Columns | 60 |
| Reading direction | forward |
| Mean pairwise identity | 98.67 |
| Shannon entropy | 0.02406 |
| G+C content | 0.52667 |
| Mean single sequence MFE | -14.48 |
| Consensus MFE | -14.42 |
| Energy contribution | -14.62 |
| Covariance contribution | 0.20 |
| Combinations/Pair | 1.00 |
| Mean z-score | -1.72 |
| Structure conservation index | 1.00 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 1.49 |
| SVM RNA-class probability | 0.942842 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr2L 14930415 60 + 23011544 ACGCCCAUGUUCCCGGCAAUAAACAAUGGCCACAGAAGCACAUACGGGAAGACACUUACA .......(.((((((...........((....))..........)))))).)........ ( -9.60, z-score = 0.09, R) >droSim1.chr2L 14679422 60 + 22036055 CCGCCCAUGUUCCCGGCCAUAAACAAUGGCCACAGAAGCACAUACGGGAAGACACUUACA .......(.(((((((((((.....))))))......(......)))))).)........ ( -15.70, z-score = -2.17, R) >droSec1.super_3 1200317 60 + 7220098 CCGCCCAUGUUCCCGGCCAUAAACAAUGGCCACAGAAGCACAUACGGGAAGACACUUACA .......(.(((((((((((.....))))))......(......)))))).)........ ( -15.70, z-score = -2.17, R) >droYak2.chr2L 15043001 60 + 22324452 CCGCCCAUGUUCCCGGCCAUAAACAAUGGCCACAGAAGCACAUACGGGAAGACACUUACA .......(.(((((((((((.....))))))......(......)))))).)........ ( -15.70, z-score = -2.17, R) >droEre2.scaffold_4929 6676331 60 + 26641161 CCGCCCAUGUUCCCGGCCAUAAACAAUGGCCACAGAAGCACAUACGGGAAGACACUUACA .......(.(((((((((((.....))))))......(......)))))).)........ ( -15.70, z-score = -2.17, R) >consensus CCGCCCAUGUUCCCGGCCAUAAACAAUGGCCACAGAAGCACAUACGGGAAGACACUUACA .......(.(((((((((((.....))))))......(......)))))).)........ (-14.42 = -14.62 + 0.20)
| Location | 14,930,415 – 14,930,475 |
|---|---|
| Length | 60 |
| Sequences | 5 |
| Columns | 60 |
| Reading direction | reverse |
| Mean pairwise identity | 98.67 |
| Shannon entropy | 0.02406 |
| G+C content | 0.52667 |
| Mean single sequence MFE | -19.92 |
| Consensus MFE | -19.92 |
| Energy contribution | -20.12 |
| Covariance contribution | 0.20 |
| Combinations/Pair | 1.00 |
| Mean z-score | -1.51 |
| Structure conservation index | 1.00 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 1.18 |
| SVM RNA-class probability | 0.906088 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr2L 14930415 60 - 23011544 UGUAAGUGUCUUCCCGUAUGUGCUUCUGUGGCCAUUGUUUAUUGCCGGGAACAUGGGCGU .((..((((..(((((.(((.(((.....)))))).((.....)))))))))))..)).. ( -14.80, z-score = -0.07, R) >droSim1.chr2L 14679422 60 - 22036055 UGUAAGUGUCUUCCCGUAUGUGCUUCUGUGGCCAUUGUUUAUGGCCGGGAACAUGGGCGG .((..((((..((((......((....))((((((.....))))))))))))))..)).. ( -21.20, z-score = -1.87, R) >droSec1.super_3 1200317 60 - 7220098 UGUAAGUGUCUUCCCGUAUGUGCUUCUGUGGCCAUUGUUUAUGGCCGGGAACAUGGGCGG .((..((((..((((......((....))((((((.....))))))))))))))..)).. ( -21.20, z-score = -1.87, R) >droYak2.chr2L 15043001 60 - 22324452 UGUAAGUGUCUUCCCGUAUGUGCUUCUGUGGCCAUUGUUUAUGGCCGGGAACAUGGGCGG .((..((((..((((......((....))((((((.....))))))))))))))..)).. ( -21.20, z-score = -1.87, R) >droEre2.scaffold_4929 6676331 60 - 26641161 UGUAAGUGUCUUCCCGUAUGUGCUUCUGUGGCCAUUGUUUAUGGCCGGGAACAUGGGCGG .((..((((..((((......((....))((((((.....))))))))))))))..)).. ( -21.20, z-score = -1.87, R) >consensus UGUAAGUGUCUUCCCGUAUGUGCUUCUGUGGCCAUUGUUUAUGGCCGGGAACAUGGGCGG .((..((((..((((......((....))((((((.....))))))))))))))..)).. (-19.92 = -20.12 + 0.20)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 21:41:52 2011