Locus 1941

Sequence ID dm3.chr2L
Location 14,922,325 – 14,922,395
Length 70
Max. P 0.775755
window2679

overview

Window 9

Location 14,922,325 – 14,922,395
Length 70
Sequences 6
Columns 71
Reading direction forward
Mean pairwise identity 88.63
Shannon entropy 0.22302
G+C content 0.39762
Mean single sequence MFE -12.23
Consensus MFE -9.47
Energy contribution -10.63
Covariance contribution 1.17
Combinations/Pair 1.00
Mean z-score -1.89
Structure conservation index 0.77
Background model dinucleotide
Decision model sequence based alignment quality
SVM decision value 0.65
SVM RNA-class probability 0.775755
Prediction RNA

Download alignment: ClustalW | MAF

>dm3.chr2L 14922325 70 + 23011544
AAACUGAACUAAUACAACAAUGGAUUAUUCAGCCA-UAGUGCUGCCCAGCAAUAAUCCGUUCUAAAGCCAC
..................(((((((((((((((..-....))))......))))))))))).......... ( -12.70, z-score =  -1.89, R)
>droSim1.chr2L 14670618 70 + 22036055
AAACUGAACUAAUACAGCAAUGGAUUAUUCAGCCA-UAGUGCUGCCCAACAAUAAUCCGUUCUAAAGCCAC
...............((.(((((((((((((((..-....))))......)))))))))))))........ ( -14.00, z-score =  -2.45, R)
>droSec1.super_3 1192276 70 + 7220098
AAACUGAACUAAUACAGCAAUGGAUAAUUCAGCCA-UAGUGCUGCCCAACAAUAAUCCGUUCUAAAGCCAC
...............((.(((((((.(((((((..-....))))......))).)))))))))........ ( -10.10, z-score =  -0.87, R)
>droYak2.chr2L 15034515 70 + 22324452
AAACUGAACUAAUGCAGCAAUGGAUUAUUCAGCCA-UAGUGCUGCCCAACAAUAAUCCGUUCUAAAGCCAC
...............((.(((((((((((((((..-....))))......)))))))))))))........ ( -14.00, z-score =  -1.72, R)
>droEre2.scaffold_4929 6668255 70 + 26641161
AAACCGAACUAAUGCAGUAAUGGAUUAUUCAGCCA-AAGUGCUGCCCAACAAUAAUCCGUUCUAAAGCCAC
...............((.(((((((((((((((..-....))))......)))))))))))))........ ( -14.00, z-score =  -2.49, R)
>droAna3.scaffold_12916 15253859 70 - 16180835
AAUCAGAACUAAUUCAGUAAUGGAUCAUUCAGCCAGCAGCACUAAA-AUCUAAAAUCCGUUCUAUAACCAC
....(((((..(((((....)))))......((.....))......-...........)))))........ (  -8.60, z-score =  -1.90, R)
>consensus
AAACUGAACUAAUACAGCAAUGGAUUAUUCAGCCA_UAGUGCUGCCCAACAAUAAUCCGUUCUAAAGCCAC
...............((.((((((((((((((((....).))))......)))))))))))))........ ( -9.47 = -10.63 +   1.17)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 21:41:51 2011