| Sequence ID | dm3.chr2L |
|---|---|
| Location | 1,373,332 – 1,373,424 |
| Length | 92 |
| Max. P | 0.666175 |
| Location | 1,373,332 – 1,373,424 |
|---|---|
| Length | 92 |
| Sequences | 6 |
| Columns | 104 |
| Reading direction | reverse |
| Mean pairwise identity | 90.65 |
| Shannon entropy | 0.16353 |
| G+C content | 0.42527 |
| Mean single sequence MFE | -27.89 |
| Consensus MFE | -18.99 |
| Energy contribution | -19.02 |
| Covariance contribution | 0.03 |
| Combinations/Pair | 1.05 |
| Mean z-score | -2.37 |
| Structure conservation index | 0.68 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.38 |
| SVM RNA-class probability | 0.666175 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr2L 1373332 92 - 23011544 GCGUCUGAAGGCGCGGAAAAGUUUUAAUAAAUCCGCAAAUUACUUUAUAAGCAACUCGUUUUCGGGCUGCUGCUUAUUUUGUUUGCUCGGUG------------ (((((....)))))(((..............)))((((((.........((((.((((....)))).)))).........))))))......------------ ( -24.61, z-score = -1.34, R) >droSim1.chr2L 1346649 89 - 22036055 GCGUCUGAAGGCGCGGAAAAGUUUUAAUAAAUCCGCAAAUUACUUUAUAAGCAACUCGUUUUCGG---GCUGCUUAUUUUGUUUGCUCGGUG------------ (((((....)))))(((..............)))((((((......(((((((.((((....)))---).)))))))...))))))......------------ ( -26.74, z-score = -2.62, R) >droSec1.super_14 1321342 89 - 2068291 GCGUCUGAAGGCGCGGAAAAGUUUUAAUAAAUCUGCAAAUUACUUUAUAAGCAACUCGUUUUCGG---GCUGCUUAUUUUGUUUGCUCGGUG------------ (((((....)))))................(((.((((((......(((((((.((((....)))---).)))))))...))))))..))).------------ ( -25.80, z-score = -2.62, R) >droYak2.chr2L 1347753 89 - 22324452 GCGUCUGAAGGCGCGGAAAAGUUUUAAUAAAUCCGCAAAUUACUUUAUAAGCAACUCGUUUUCGG---GCUGCUUAUUUUGUUUGCGCGGUG------------ (((((....)))))................((((((((((......(((((((.((((....)))---).)))))))...))))))).))).------------ ( -29.40, z-score = -2.91, R) >droEre2.scaffold_4929 1417020 89 - 26641161 GCGGCUGAAGGCGCGCAAAAGUUUUAAUAAAUCCGCAAAUUACUUUAUAAGCAACUCGUUUUCGG---GCUGCUUAUUUUGUUUGCGCGGUG------------ (((((.....)).)))..............((((((((((......(((((((.((((....)))---).)))))))...))))))).))).------------ ( -28.40, z-score = -2.03, R) >droAna3.scaffold_12916 4835963 104 - 16180835 GUGUCUGAAGGCGCUGAAAACUUUUAAUAAAUCCGCAAAUUACUUUAUAAGCAACUCGUUUUCGGGUUGCUGCUUAUUUUGUUUGCUUGGCGUCGGGUCGGCCG ..(.((((.(((((..(....(((....)))...((((((.........(((((((((....))))))))).........)))))))..)))))...)))).). ( -32.37, z-score = -2.70, R) >consensus GCGUCUGAAGGCGCGGAAAAGUUUUAAUAAAUCCGCAAAUUACUUUAUAAGCAACUCGUUUUCGG___GCUGCUUAUUUUGUUUGCUCGGUG____________ (((((....)))))....................((((((......(((((((..(((....))).....)))))))...)))))).................. (-18.99 = -19.02 + 0.03)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 21:08:25 2011